Analysis of interatomic Contacts of Structural Units in PDB entry:
6K8D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6K8D entry

There are 4 chains in PDB entry 6K8D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 0	LYS 289
B	MET 0	LYS 289
C	MET 0	LYS 289
D	MET 0	GLU 287

There are 52 helices in PDB entry 6K8D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	16	Right-handed 310
Helix 2	AA2	A	34	44	Right-handed alpha
Helix 3	AA3	A	58	65	Right-handed alpha
Helix 4	AA4	A	68	78	Right-handed alpha
Helix 5	AA5	A	80	87	Right-handed alpha
Helix 6	AA6	A	107	115	Right-handed alpha
Helix 7	AA7	A	115	120	Right-handed alpha
Helix 8	AA8	A	140	153	Right-handed alpha
Helix 9	AA9	A	213	221	Right-handed alpha
Helix 10	AB1	A	231	240	Right-handed alpha
Helix 11	AB2	A	259	273	Right-handed alpha
Helix 12	AB3	A	277	287	Right-handed alpha
Helix 13	AB4	B	12	16	Right-handed 310
Helix 14	AB5	B	23	27	Right-handed 310
Helix 15	AB6	B	33	44	Right-handed alpha
Helix 16	AB7	B	58	65	Right-handed alpha
Helix 17	AB8	B	68	78	Right-handed alpha
Helix 18	AB9	B	80	89	Right-handed alpha
Helix 19	AC1	B	107	114	Right-handed alpha
Helix 20	AC2	B	115	120	Right-handed alpha
Helix 21	AC3	B	140	153	Right-handed alpha
Helix 22	AC4	B	165	170	Right-handed 310
Helix 23	AC5	B	214	220	Right-handed alpha
Helix 24	AC6	B	231	241	Right-handed alpha
Helix 25	AC7	B	259	273	Right-handed alpha
Helix 26	AC8	B	277	287	Right-handed alpha
Helix 27	AC9	C	17	21	Right-handed 310
Helix 28	AD1	C	23	26	Right-handed 310
Helix 29	AD2	C	34	44	Right-handed alpha
Helix 30	AD3	C	58	65	Right-handed alpha
Helix 31	AD4	C	68	78	Right-handed alpha
Helix 32	AD5	C	80	89	Right-handed alpha
Helix 33	AD6	C	107	114	Right-handed alpha
Helix 34	AD7	C	115	120	Right-handed alpha
Helix 35	AD8	C	140	153	Right-handed alpha
Helix 36	AD9	C	214	220	Right-handed alpha
Helix 37	AE1	C	231	241	Right-handed alpha
Helix 38	AE2	C	259	273	Right-handed alpha
Helix 39	AE3	C	274	287	Right-handed alpha
Helix 40	AE4	D	23	26	Right-handed 310
Helix 41	AE5	D	34	45	Right-handed alpha
Helix 42	AE6	D	58	65	Right-handed alpha
Helix 43	AE7	D	68	78	Right-handed alpha
Helix 44	AE8	D	80	89	Right-handed alpha
Helix 45	AE9	D	107	113	Right-handed alpha
Helix 46	AF1	D	115	120	Right-handed alpha
Helix 47	AF2	D	140	153	Right-handed alpha
Helix 48	AF3	D	166	169	Right-handed 310
Helix 49	AF4	D	214	222	Right-handed alpha
Helix 50	AF5	D	232	241	Right-handed alpha
Helix 51	AF6	D	259	274	Right-handed alpha
Helix 52	AF7	D	277	287	Right-handed alpha

There are 17 sheets in PDB entry 6K8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	101	first strand
Strand 2	A	49	54	parallel
Strand 3	A	3	7	parallel
Strand 4	A	124	127	parallel
Strand 5	A	203	211	anti-parallel
Strand 6	A	156	161	anti-parallel
Strand 7	A	246	249	parallel
Strand 8	A	184	186	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	32	33	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	255	256	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	189	191	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	101	first strand
Strand 2	B	49	54	parallel
Strand 3	B	3	7	parallel
Strand 4	B	124	127	parallel
Strand 5	B	203	211	anti-parallel
Strand 6	B	155	161	anti-parallel
Strand 7	B	245	249	parallel
Strand 8	B	184	186	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	134	first strand
Strand 2	B	253	256	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	189	191	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	49	54	parallel
Strand 3	C	96	101	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	32	33	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	127	first strand
Strand 2	C	203	211	anti-parallel
Strand 3	C	156	161	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	134	first strand
Strand 2	C	253	256	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	175	first strand
Strand 2	C	187	192	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	49	54	parallel
Strand 3	D	96	101	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	29	first strand
Strand 2	D	32	33	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	127	first strand
Strand 2	D	203	211	anti-parallel
Strand 3	D	156	161	anti-parallel
Strand 4	D	248	249	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	134	first strand
Strand 2	D	253	256	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	175	first strand
Strand 2	D	187	192	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6K8D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6K8D