Analysis of interatomic Contacts of Structural Units in PDB entry:
6K8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K8H entry

There are 2 chains in PDB entry 6K8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9GLY 446
B
 GLY 8GLU 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 6K8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
17 30Right-handed alpha
Helix 3
AA3
A
31 34Right-handed 310
Helix 4
AA4
A
36 40Right-handed 310
Helix 5
AA5
A
68 73Right-handed alpha
Helix 6
AA6
A
80 92Right-handed alpha
Helix 7
AA7
A
101 115Right-handed alpha
Helix 8
AA8
A
126 143Right-handed alpha
Helix 9
AA9
A
187 193Right-handed alpha
Helix 10
AB1
A
201 212Right-handed alpha
Helix 11
AB2
A
225 229Right-handed 310
Helix 12
AB3
A
234 248Right-handed alpha
Helix 13
AB4
A
258 263Right-handed 310
Helix 14
AB5
A
265 272Right-handed alpha
Helix 15
AB6
A
283 286Right-handed 310
Helix 16
AB7
A
296 301Right-handed alpha
Helix 17
AB8
A
302 304Right-handed 310
Helix 18
AB9
A
321 335Right-handed alpha
Helix 19
AC1
A
336 361Right-handed alpha
Helix 20
AC2
A
385 390Right-handed 310
Helix 21
AC3
A
392 408Right-handed alpha
Helix 22
AC4
A
426 446Right-handed alpha
Helix 23
AC5
B
10 14Right-handed 310
Helix 24
AC6
B
17 30Right-handed alpha
Helix 25
AC7
B
31 34Right-handed 310
Helix 26
AC8
B
36 40Right-handed 310
Helix 27
AC9
B
68 73Right-handed alpha
Helix 28
AD1
B
80 92Right-handed alpha
Helix 29
AD2
B
101 115Right-handed alpha
Helix 30
AD3
B
126 143Right-handed alpha
Helix 31
AD4
B
158 163Right-handed alpha
Helix 32
AD5
B
187 193Right-handed alpha
Helix 33
AD6
B
201 212Right-handed alpha
Helix 34
AD7
B
225 229Right-handed 310
Helix 35
AD8
B
234 249Right-handed alpha
Helix 36
AD9
B
258 263Right-handed 310
Helix 37
AE1
B
265 272Right-handed alpha
Helix 38
AE2
B
283 286Right-handed 310
Helix 39
AE3
B
296 301Right-handed alpha
Helix 40
AE4
B
302 304Right-handed 310
Helix 41
AE5
B
321 335Right-handed alpha
Helix 42
AE6
B
336 362Right-handed alpha
Helix 43
AE7
B
385 390Right-handed 310
Helix 44
AE8
B
392 409Right-handed alpha
Helix 45
AE9
B
426 446Right-handed alpha
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There are 6 sheets in PDB entry 6K8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
55 58anti-parallel
Strand 3
A
63 66anti-parallel
Strand 4
A
411 412parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
291 295anti-parallel
Strand 3
A
277 281anti-parallel
Strand 4
A
251 255parallel
Strand 5
A
216 221parallel
Strand 6
A
146 150parallel
Strand 7
A
194 197parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 370first strand
Strand 2
A
373 377anti-parallel
Strand 3
A
418 420anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 52first strand
Strand 2
B
55 58anti-parallel
Strand 3
B
63 66anti-parallel
Strand 4
B
411 412parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
291 295anti-parallel
Strand 3
B
277 281anti-parallel
Strand 4
B
251 255parallel
Strand 5
B
216 221parallel
Strand 6
B
146 150parallel
Strand 7
B
194 197parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
366 370first strand
Strand 2
B
373 377anti-parallel
Strand 3
B
418 420anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il