Analysis of interatomic Contacts of Structural Units in PDB entry:
6K8I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K8I entry

There are 2 chains in PDB entry 6K8I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5ALA 484
B
 LYS 5THR 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6K8I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 29Right-handed alpha
Helix 2
AA2
A
39 44Right-handed alpha
Helix 3
AA3
A
45 47Right-handed 310
Helix 4
AA4
A
49 70Right-handed alpha
Helix 5
AA5
A
81 94Right-handed alpha
Helix 6
AA6
A
105 121Right-handed alpha
Helix 7
AA7
A
151 161Right-handed alpha
Helix 8
AA8
A
189 193Right-handed 310
Helix 9
AA9
A
196 198Right-handed 310
Helix 10
AB1
A
199 205Right-handed alpha
Helix 11
AB2
A
206 209Right-handed 310
Helix 12
AB3
A
213 228Right-handed alpha
Helix 13
AB4
A
231 236Right-handed alpha
Helix 14
AB5
A
247 253Right-handed alpha
Helix 15
AB6
A
257 275Right-handed alpha
Helix 16
AB7
A
277 304Right-handed alpha
Helix 17
AB8
A
324 334Right-handed alpha
Helix 18
AB9
A
338 352Right-handed alpha
Helix 19
AC1
A
355 369Right-handed alpha
Helix 20
AC2
A
373 385Right-handed alpha
Helix 21
AC3
A
389 400Right-handed alpha
Helix 22
AC4
A
415 424Right-handed alpha
Helix 23
AC5
A
427 434Right-handed alpha
Helix 24
AC6
A
435 438Right-handed 310
Helix 25
AC7
A
441 446Right-handed alpha
Helix 26
AC8
A
447 451Right-handed 310
Helix 27
AC9
A
452 459Right-handed alpha
Helix 28
AD1
A
473 483Right-handed alpha
Helix 29
AD2
B
20 30Right-handed alpha
Helix 30
AD3
B
39 44Right-handed alpha
Helix 31
AD4
B
45 47Right-handed 310
Helix 32
AD5
B
49 70Right-handed alpha
Helix 33
AD6
B
81 94Right-handed alpha
Helix 34
AD7
B
105 121Right-handed alpha
Helix 35
AD8
B
150 160Right-handed alpha
Helix 36
AD9
B
189 193Right-handed 310
Helix 37
AE1
B
196 198Right-handed 310
Helix 38
AE2
B
199 205Right-handed alpha
Helix 39
AE3
B
206 209Right-handed 310
Helix 40
AE4
B
213 228Right-handed alpha
Helix 41
AE5
B
231 236Right-handed alpha
Helix 42
AE6
B
247 253Right-handed alpha
Helix 43
AE7
B
257 275Right-handed alpha
Helix 44
AE8
B
277 304Right-handed alpha
Helix 45
AE9
B
324 334Right-handed alpha
Helix 46
AF1
B
338 352Right-handed alpha
Helix 47
AF2
B
355 369Right-handed alpha
Helix 48
AF3
B
373 385Right-handed alpha
Helix 49
AF4
B
389 401Right-handed alpha
Helix 50
AF5
B
415 424Right-handed alpha
Helix 51
AF6
B
427 434Right-handed alpha
Helix 52
AF7
B
435 438Right-handed 310
Helix 53
AF8
B
441 446Right-handed alpha
Helix 54
AF9
B
447 451Right-handed 310
Helix 55
AG1
B
452 459Right-handed alpha
Helix 56
AG2
B
473 486Right-handed alpha
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There are 2 sheets in PDB entry 6K8I. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
31 38parallel
Strand 3
A
6 11parallel
Strand 4
A
97 101parallel
Strand 5
A
125 129parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
97 101parallel
Strand 3
B
6 11parallel
Strand 4
B
31 38parallel
Strand 5
B
75 78parallel
Strand 6
B
186 187anti-parallel
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