Analysis of interatomic Contacts of Structural Units in PDB entry:
6K8N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6K8N entry

There are 4 chains in PDB entry 6K8N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 668
B	MET 1	LEU 665
C	MET 1	SER 667
D	MET 1	SER 666

There are100 helices in PDB entry 6K8N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	28	Right-handed alpha
Helix 2	AA2	A	80	84	Right-handed alpha
Helix 3	AA3	A	85	89	Right-handed 310
Helix 4	AA4	A	90	103	Right-handed alpha
Helix 5	AA5	A	114	129	Right-handed alpha
Helix 6	AA6	A	130	132	Right-handed 310
Helix 7	AA7	A	143	153	Right-handed alpha
Helix 8	AA8	A	158	192	Right-handed alpha
Helix 9	AA9	A	202	219	Right-handed alpha
Helix 10	AB1	A	249	259	Right-handed alpha
Helix 11	AB2	A	284	297	Right-handed alpha
Helix 12	AB3	A	299	313	Right-handed alpha
Helix 13	AB4	A	331	341	Right-handed alpha
Helix 14	AB5	A	344	356	Right-handed alpha
Helix 15	AB6	A	385	403	Right-handed alpha
Helix 16	AB7	A	435	440	Right-handed 310
Helix 17	AB8	A	479	491	Right-handed alpha
Helix 18	AB9	A	494	508	Right-handed alpha
Helix 19	AC1	A	521	535	Right-handed alpha
Helix 20	AC2	A	536	539	Right-handed 310
Helix 21	AC3	A	540	556	Right-handed alpha
Helix 22	AC4	A	560	594	Right-handed alpha
Helix 23	AC5	A	616	637	Right-handed alpha
Helix 24	AC6	A	639	650	Right-handed alpha
Helix 25	AC7	A	654	667	Right-handed alpha
Helix 26	AC8	B	16	28	Right-handed alpha
Helix 27	AC9	B	80	84	Right-handed alpha
Helix 28	AD1	B	85	89	Right-handed 310
Helix 29	AD2	B	90	102	Right-handed alpha
Helix 30	AD3	B	114	129	Right-handed alpha
Helix 31	AD4	B	130	132	Right-handed 310
Helix 32	AD5	B	143	153	Right-handed alpha
Helix 33	AD6	B	158	192	Right-handed alpha
Helix 34	AD7	B	202	220	Right-handed alpha
Helix 35	AD8	B	249	259	Right-handed alpha
Helix 36	AD9	B	284	297	Right-handed alpha
Helix 37	AE1	B	299	313	Right-handed alpha
Helix 38	AE2	B	331	341	Right-handed alpha
Helix 39	AE3	B	344	356	Right-handed alpha
Helix 40	AE4	B	385	403	Right-handed alpha
Helix 41	AE5	B	435	440	Right-handed 310
Helix 42	AE6	B	479	491	Right-handed alpha
Helix 43	AE7	B	497	508	Right-handed alpha
Helix 44	AE8	B	521	535	Right-handed alpha
Helix 45	AE9	B	536	539	Right-handed 310
Helix 46	AF1	B	540	556	Right-handed alpha
Helix 47	AF2	B	560	594	Right-handed alpha
Helix 48	AF3	B	615	637	Right-handed alpha
Helix 49	AF4	B	639	650	Right-handed alpha
Helix 50	AF5	B	654	665	Right-handed alpha
Helix 51	AF6	C	16	28	Right-handed alpha
Helix 52	AF7	C	81	83	Right-handed 310
Helix 53	AF8	C	87	89	Right-handed 310
Helix 54	AF9	C	90	103	Right-handed alpha
Helix 55	AG1	C	114	129	Right-handed alpha
Helix 56	AG2	C	130	132	Right-handed 310
Helix 57	AG3	C	143	153	Right-handed alpha
Helix 58	AG4	C	158	187	Right-handed alpha
Helix 59	AG5	C	202	219	Right-handed alpha
Helix 60	AG6	C	249	259	Right-handed alpha
Helix 61	AG7	C	284	297	Right-handed alpha
Helix 62	AG8	C	299	313	Right-handed alpha
Helix 63	AG9	C	331	340	Right-handed alpha
Helix 64	AH1	C	344	356	Right-handed alpha
Helix 65	AH2	C	385	403	Right-handed alpha
Helix 66	AH3	C	435	440	Right-handed 310
Helix 67	AH4	C	479	491	Right-handed alpha
Helix 68	AH5	C	497	508	Right-handed alpha
Helix 69	AH6	C	521	535	Right-handed alpha
Helix 70	AH7	C	536	539	Right-handed 310
Helix 71	AH8	C	540	556	Right-handed alpha
Helix 72	AH9	C	560	594	Right-handed alpha
Helix 73	AI1	C	616	637	Right-handed alpha
Helix 74	AI2	C	639	650	Right-handed alpha
Helix 75	AI3	C	654	667	Right-handed alpha
Helix 76	AI4	D	16	28	Right-handed alpha
Helix 77	AI5	D	80	84	Right-handed alpha
Helix 78	AI6	D	85	89	Right-handed 310
Helix 79	AI7	D	90	103	Right-handed alpha
Helix 80	AI8	D	114	129	Right-handed alpha
Helix 81	AI9	D	130	132	Right-handed 310
Helix 82	AJ1	D	143	153	Right-handed alpha
Helix 83	AJ2	D	158	189	Right-handed alpha
Helix 84	AJ3	D	202	219	Right-handed alpha
Helix 85	AJ4	D	249	261	Right-handed alpha
Helix 86	AJ5	D	284	297	Right-handed alpha
Helix 87	AJ6	D	299	313	Right-handed alpha
Helix 88	AJ7	D	331	340	Right-handed alpha
Helix 89	AJ8	D	344	356	Right-handed alpha
Helix 90	AJ9	D	385	403	Right-handed alpha
Helix 91	AK1	D	435	440	Right-handed 310
Helix 92	AK2	D	479	490	Right-handed alpha
Helix 93	AK3	D	497	508	Right-handed alpha
Helix 94	AK4	D	521	535	Right-handed alpha
Helix 95	AK5	D	536	539	Right-handed 310
Helix 96	AK6	D	540	556	Right-handed alpha
Helix 97	AK7	D	560	594	Right-handed alpha
Helix 98	AK8	D	615	637	Right-handed alpha
Helix 99	AK9	D	639	650	Right-handed alpha
Helix 100	AL1	D	654	666	Right-handed alpha

There are 18 sheets in PDB entry 6K8N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	36	first strand
Strand 2	A	39	44	anti-parallel
Strand 3	A	51	56	anti-parallel
Strand 4	A	9	14	parallel
Strand 5	A	104	109	parallel
Strand 6	A	134	136	parallel
Strand 7	A	155	156	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	65	first strand
Strand 2	A	76	79	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	247	first strand
Strand 2	A	224	234	anti-parallel
Strand 3	A	459	471	anti-parallel
Strand 4	A	264	277	anti-parallel
Strand 5	A	407	418	anti-parallel
Strand 6	A	424	434	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	514	first strand
Strand 2	A	517	520	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	611	first strand
Strand 2	A	614	615	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	36	first strand
Strand 2	B	39	44	anti-parallel
Strand 3	B	51	56	anti-parallel
Strand 4	B	9	14	parallel
Strand 5	B	104	110	parallel
Strand 6	B	134	136	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	66	first strand
Strand 2	B	75	79	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	247	first strand
Strand 2	B	224	234	anti-parallel
Strand 3	B	459	471	anti-parallel
Strand 4	B	264	277	anti-parallel
Strand 5	B	407	418	anti-parallel
Strand 6	B	424	434	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	514	first strand
Strand 2	B	517	520	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	36	first strand
Strand 2	C	39	44	anti-parallel
Strand 3	C	51	56	anti-parallel
Strand 4	C	9	14	parallel
Strand 5	C	104	109	parallel
Strand 6	C	134	136	parallel
Strand 7	C	155	156	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	66	first strand
Strand 2	C	75	79	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	242	first strand
Strand 2	C	224	234	anti-parallel
Strand 3	C	459	471	anti-parallel
Strand 4	C	264	277	anti-parallel
Strand 5	C	407	418	anti-parallel
Strand 6	C	424	434	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	511	514	first strand
Strand 2	C	517	520	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	609	611	first strand
Strand 2	C	614	615	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	36	first strand
Strand 2	D	39	44	anti-parallel
Strand 3	D	51	56	anti-parallel
Strand 4	D	9	14	parallel
Strand 5	D	104	110	parallel
Strand 6	D	134	136	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	65	first strand
Strand 2	D	76	79	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	242	first strand
Strand 2	D	224	234	anti-parallel
Strand 3	D	459	471	anti-parallel
Strand 4	D	264	277	anti-parallel
Strand 5	D	407	418	anti-parallel
Strand 6	D	424	434	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	514	first strand
Strand 2	D	517	520	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6K8N

Analysis of interatomic Contacts of Structural Units in PDB entry:
6K8N