Analysis of interatomic Contacts of Structural Units in PDB entry:
6K8O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K8O entry

There are 2 chains in PDB entry 6K8O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2SER 666
B
 G 701 C 708
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6K8O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 28Right-handed alpha
Helix 2
AA2
A
81 83Right-handed 310
Helix 3
AA3
A
85 89Right-handed 310
Helix 4
AA4
A
90 102Right-handed alpha
Helix 5
AA5
A
114 129Right-handed alpha
Helix 6
AA6
A
130 132Right-handed 310
Helix 7
AA7
A
143 153Right-handed alpha
Helix 8
AA8
A
158 192Right-handed alpha
Helix 9
AA9
A
202 219Right-handed alpha
Helix 10
AB1
A
249 261Right-handed alpha
Helix 11
AB2
A
284 297Right-handed alpha
Helix 12
AB3
A
299 313Right-handed alpha
Helix 13
AB4
A
331 341Right-handed alpha
Helix 14
AB5
A
344 356Right-handed alpha
Helix 15
AB6
A
385 403Right-handed alpha
Helix 16
AB7
A
435 440Right-handed 310
Helix 17
AB8
A
479 491Right-handed alpha
Helix 18
AB9
A
496 508Right-handed alpha
Helix 19
AC1
A
521 535Right-handed alpha
Helix 20
AC2
A
536 539Right-handed 310
Helix 21
AC3
A
540 556Right-handed alpha
Helix 22
AC4
A
560 580Right-handed alpha
Helix 23
AC5
A
582 594Right-handed alpha
Helix 24
AC6
A
616 637Right-handed alpha
Helix 25
AC7
A
639 648Right-handed alpha
Helix 26
AC8
A
654 665Right-handed alpha
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There are 5 sheets in PDB entry 6K8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
39 47anti-parallel
Strand 3
A
50 56anti-parallel
Strand 4
A
9 14parallel
Strand 5
A
104 110parallel
Strand 6
A
134 136parallel
Strand 7
A
155 156anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
75 79anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 247first strand
Strand 2
A
224 234anti-parallel
Strand 3
A
459 471anti-parallel
Strand 4
A
264 277anti-parallel
Strand 5
A
407 419anti-parallel
Strand 6
A
424 434anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 514first strand
Strand 2
A
517 520anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 611first strand
Strand 2
A
614 615anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il