Analysis of interatomic Contacts of Structural Units in PDB entry:
6K8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K8P entry

There are 4 chains in PDB entry 6K8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 295
B
 THR 16LEU 295
C
 ALA 2LEU 295
D
 THR 16LEU 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6K8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 45Right-handed alpha
Helix 2
AA2
A
46 51Right-handed 310
Helix 3
AA3
A
81 96Right-handed alpha
Helix 4
AA4
A
134 138Right-handed 310
Helix 5
AA5
A
156 170Right-handed alpha
Helix 6
AA6
A
170 176Right-handed alpha
Helix 7
AA7
A
177 182Right-handed alpha
Helix 8
AA8
A
183 188Right-handed 310
Helix 9
AA9
A
203 207Right-handed 310
Helix 10
AB1
A
219 228Right-handed alpha
Helix 11
AB2
A
237 247Right-handed alpha
Helix 12
AB3
A
271 293Right-handed alpha
Helix 13
AB4
B
36 45Right-handed alpha
Helix 14
AB5
B
81 96Right-handed alpha
Helix 15
AB6
B
134 138Right-handed 310
Helix 16
AB7
B
156 177Right-handed alpha
Helix 17
AB8
B
179 183Right-handed 310
Helix 18
AB9
B
203 207Right-handed 310
Helix 19
AC1
B
219 228Right-handed alpha
Helix 20
AC2
B
237 247Right-handed alpha
Helix 21
AC3
B
271 293Right-handed alpha
Helix 22
AC4
C
36 45Right-handed alpha
Helix 23
AC5
C
46 51Right-handed 310
Helix 24
AC6
C
81 94Right-handed alpha
Helix 25
AC7
C
134 138Right-handed 310
Helix 26
AC8
C
156 170Right-handed alpha
Helix 27
AC9
C
170 176Right-handed alpha
Helix 28
AD1
C
177 183Right-handed alpha
Helix 29
AD2
C
203 207Right-handed 310
Helix 30
AD3
C
219 228Right-handed alpha
Helix 31
AD4
C
237 247Right-handed alpha
Helix 32
AD5
C
271 293Right-handed alpha
Helix 33
AD6
D
36 45Right-handed alpha
Helix 34
AD7
D
81 96Right-handed alpha
Helix 35
AD8
D
134 138Right-handed 310
Helix 36
AD9
D
156 176Right-handed alpha
Helix 37
AE1
D
177 182Right-handed 310
Helix 38
AE2
D
185 189Right-handed 310
Helix 39
AE3
D
203 207Right-handed 310
Helix 40
AE4
D
219 228Right-handed alpha
Helix 41
AE5
D
237 247Right-handed alpha
Helix 42
AE6
D
271 293Right-handed alpha
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There are 8 sheets in PDB entry 6K8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
62 68anti-parallel
Strand 3
A
71 77anti-parallel
Strand 4
A
30 34parallel
Strand 5
A
100 110parallel
Strand 6
A
231 235anti-parallel
Strand 7
A
195 199parallel
Strand 8
A
127 132parallel
Strand 9
A
147 149anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
62 68anti-parallel
Strand 3
A
71 77anti-parallel
Strand 4
A
30 34parallel
Strand 5
A
100 110parallel
Strand 6
A
252 263parallel
Strand 7
A
120 122anti-parallel
Strand 8
A
191 193parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
62 68anti-parallel
Strand 3
B
71 77anti-parallel
Strand 4
B
30 34parallel
Strand 5
B
100 110parallel
Strand 6
B
231 235anti-parallel
Strand 7
B
195 199parallel
Strand 8
B
127 132parallel
Strand 9
B
147 149anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
62 68anti-parallel
Strand 3
B
71 77anti-parallel
Strand 4
B
30 34parallel
Strand 5
B
100 110parallel
Strand 6
B
252 263parallel
Strand 7
B
120 122anti-parallel
Strand 8
B
191 193parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 56first strand
Strand 2
C
62 68anti-parallel
Strand 3
C
71 77anti-parallel
Strand 4
C
30 34parallel
Strand 5
C
100 110parallel
Strand 6
C
231 235anti-parallel
Strand 7
C
195 199parallel
Strand 8
C
127 132parallel
Strand 9
C
147 149anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 56first strand
Strand 2
C
62 68anti-parallel
Strand 3
C
71 77anti-parallel
Strand 4
C
30 34parallel
Strand 5
C
100 110parallel
Strand 6
C
252 263parallel
Strand 7
C
120 122anti-parallel
Strand 8
C
191 193parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 56first strand
Strand 2
D
62 68anti-parallel
Strand 3
D
71 77anti-parallel
Strand 4
D
30 34parallel
Strand 5
D
100 110parallel
Strand 6
D
231 235anti-parallel
Strand 7
D
195 199parallel
Strand 8
D
127 132parallel
Strand 9
D
147 149anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 56first strand
Strand 2
D
62 68anti-parallel
Strand 3
D
71 77anti-parallel
Strand 4
D
30 34parallel
Strand 5
D
100 110parallel
Strand 6
D
252 263parallel
Strand 7
D
120 122anti-parallel
Strand 8
D
191 193parallel
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