Analysis of interatomic Contacts of Structural Units in PDB entry:
6K8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K8U entry

There are 2 chains in PDB entry 6K8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 569VAL 1230
B
 PHE 569VAL 1230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 6K8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
589 602Right-handed alpha
Helix 2
AA2
A
612 631Right-handed alpha
Helix 3
AA3
A
635 637Right-handed 310
Helix 4
AA4
A
649 665Right-handed alpha
Helix 5
AA5
A
682 686Right-handed 310
Helix 6
AA6
A
687 699Right-handed alpha
Helix 7
AA7
A
699 717Right-handed alpha
Helix 8
AA8
A
726 730Right-handed 310
Helix 9
AA9
A
741 763Right-handed alpha
Helix 10
AB1
A
778 783Right-handed alpha
Helix 11
AB2
A
789 818Right-handed alpha
Helix 12
AB3
A
820 831Right-handed alpha
Helix 13
AB4
A
832 839Right-handed alpha
Helix 14
AB5
A
843 855Right-handed alpha
Helix 15
AB6
A
869 883Right-handed alpha
Helix 16
AB7
A
889 895Right-handed alpha
Helix 17
AB8
A
896 900Right-handed 310
Helix 18
AB9
A
916 933Right-handed alpha
Helix 19
AC1
A
942 954Right-handed alpha
Helix 20
AC2
A
986 991Right-handed alpha
Helix 21
AC3
A
992 994Right-handed 310
Helix 22
AC4
A
1005 1019Right-handed alpha
Helix 23
AC5
A
1031 1041Right-handed alpha
Helix 24
AC6
A
1043 1048Right-handed alpha
Helix 25
AC7
A
1058 1071Right-handed alpha
Helix 26
AC8
A
1096 1108Right-handed alpha
Helix 27
AC9
A
1108 1119Right-handed alpha
Helix 28
AD1
A
1140 1166Right-handed alpha
Helix 29
AD2
A
1181 1185Right-handed 310
Helix 30
AD3
A
1188 1208Right-handed alpha
Helix 31
AD4
A
1216 1223Right-handed alpha
Helix 32
AD5
B
589 602Right-handed alpha
Helix 33
AD6
B
612 631Right-handed alpha
Helix 34
AD7
B
649 665Right-handed alpha
Helix 35
AD8
B
682 686Right-handed 310
Helix 36
AD9
B
687 699Right-handed alpha
Helix 37
AE1
B
699 717Right-handed alpha
Helix 38
AE2
B
726 730Right-handed 310
Helix 39
AE3
B
741 763Right-handed alpha
Helix 40
AE4
B
778 783Right-handed alpha
Helix 41
AE5
B
789 818Right-handed alpha
Helix 42
AE6
B
820 830Right-handed alpha
Helix 43
AE7
B
832 838Right-handed alpha
Helix 44
AE8
B
843 855Right-handed alpha
Helix 45
AE9
B
869 883Right-handed alpha
Helix 46
AF1
B
889 895Right-handed alpha
Helix 47
AF2
B
896 900Right-handed 310
Helix 48
AF3
B
916 933Right-handed alpha
Helix 49
AF4
B
942 956Right-handed alpha
Helix 50
AF5
B
986 992Right-handed alpha
Helix 51
AF6
B
1005 1019Right-handed alpha
Helix 52
AF7
B
1031 1040Right-handed alpha
Helix 53
AF8
B
1043 1048Right-handed alpha
Helix 54
AF9
B
1058 1071Right-handed alpha
Helix 55
AG1
B
1096 1108Right-handed alpha
Helix 56
AG2
B
1108 1119Right-handed alpha
Helix 57
AG3
B
1140 1165Right-handed alpha
Helix 58
AG4
B
1181 1185Right-handed 310
Helix 59
AG5
B
1188 1208Right-handed alpha
Helix 60
AG6
B
1216 1222Right-handed alpha
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There are 4 sheets in PDB entry 6K8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
639 642first strand
Strand 2
A
605 609parallel
Strand 3
A
581 585parallel
Strand 4
A
669 672parallel
Strand 5
A
719 724parallel
Strand 6
A
766 771parallel
Strand 7
A
963 964parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
979 980first strand
Strand 2
A
1227 1229parallel
Strand 3
A
1172 1176parallel
Strand 4
A
1125 1130parallel
Strand 5
A
1075 1078parallel
Strand 6
A
997 1001parallel
Strand 7
A
1024 1029parallel
Strand 8
A
1050 1054parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
639 642first strand
Strand 2
B
605 609parallel
Strand 3
B
581 585parallel
Strand 4
B
669 672parallel
Strand 5
B
719 724parallel
Strand 6
B
766 771parallel
Strand 7
B
963 964parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
979 980first strand
Strand 2
B
1227 1229parallel
Strand 3
B
1172 1176parallel
Strand 4
B
1125 1130parallel
Strand 5
B
1075 1078parallel
Strand 6
B
997 1001parallel
Strand 7
B
1024 1029parallel
Strand 8
B
1050 1054parallel
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