Analysis of interatomic Contacts of Structural Units in PDB entry:
6K8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K8V entry

There are 2 chains in PDB entry 6K8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 18ALA 562
B
 PRO 18ALA 562
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6K8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 46Right-handed alpha
Helix 2
AA2
A
56 71Right-handed alpha
Helix 3
AA3
A
74 76Right-handed 310
Helix 4
AA4
A
87 103Right-handed alpha
Helix 5
AA5
A
120 124Right-handed 310
Helix 6
AA6
A
127 137Right-handed alpha
Helix 7
AA7
A
144 153Right-handed alpha
Helix 8
AA8
A
153 164Right-handed alpha
Helix 9
AA9
A
165 167Right-handed 310
Helix 10
AB1
A
178 183Right-handed 310
Helix 11
AB2
A
188 210Right-handed alpha
Helix 12
AB3
A
211 213Right-handed 310
Helix 13
AB4
A
227 241Right-handed alpha
Helix 14
AB5
A
245 255Right-handed alpha
Helix 15
AB6
A
272 285Right-handed alpha
Helix 16
AB7
A
286 289Right-handed 310
Helix 17
AB8
A
335 348Right-handed alpha
Helix 18
AB9
A
360 374Right-handed alpha
Helix 19
AC1
A
388 402Right-handed alpha
Helix 20
AC2
A
428 439Right-handed alpha
Helix 21
AC3
A
439 457Right-handed alpha
Helix 22
AC4
A
478 505Right-handed alpha
Helix 23
AC5
A
526 541Right-handed alpha
Helix 24
AC6
A
555 560Right-handed alpha
Helix 25
AC7
B
33 46Right-handed alpha
Helix 26
AC8
B
56 72Right-handed alpha
Helix 27
AC9
B
74 76Right-handed 310
Helix 28
AD1
B
87 103Right-handed alpha
Helix 29
AD2
B
120 124Right-handed 310
Helix 30
AD3
B
127 136Right-handed alpha
Helix 31
AD4
B
144 164Right-handed alpha
Helix 32
AD5
B
165 167Right-handed 310
Helix 33
AD6
B
178 183Right-handed 310
Helix 34
AD7
B
188 210Right-handed alpha
Helix 35
AD8
B
228 240Right-handed alpha
Helix 36
AD9
B
245 253Right-handed alpha
Helix 37
AE1
B
272 285Right-handed alpha
Helix 38
AE2
B
286 289Right-handed 310
Helix 39
AE3
B
335 349Right-handed alpha
Helix 40
AE4
B
359 372Right-handed alpha
Helix 41
AE5
B
388 401Right-handed alpha
Helix 42
AE6
B
428 439Right-handed alpha
Helix 43
AE7
B
439 457Right-handed alpha
Helix 44
AE8
B
478 505Right-handed alpha
Helix 45
AE9
B
526 541Right-handed alpha
Helix 46
AF1
B
555 560Right-handed alpha
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There are 4 sheets in PDB entry 6K8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 82first strand
Strand 2
A
49 54parallel
Strand 3
A
25 28parallel
Strand 4
A
107 110parallel
Strand 5
A
172 176parallel
Strand 6
A
215 221parallel
Strand 7
A
295 298parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
549 551parallel
Strand 3
A
513 518parallel
Strand 4
A
465 469parallel
Strand 5
A
408 411parallel
Strand 6
A
327 331parallel
Strand 7
A
352 357parallel
Strand 8
A
379 383parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
49 54parallel
Strand 3
B
25 28parallel
Strand 4
B
107 110parallel
Strand 5
B
172 176parallel
Strand 6
B
215 221parallel
Strand 7
B
295 298parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 311first strand
Strand 2
B
549 551parallel
Strand 3
B
513 518parallel
Strand 4
B
465 469parallel
Strand 5
B
408 411parallel
Strand 6
B
327 331parallel
Strand 7
B
352 357parallel
Strand 8
B
379 383parallel
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