Analysis of interatomic Contacts of Structural Units in PDB entry:
6K97


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K97 entry

There are 2 chains in PDB entry 6K97 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7ALA 318
B
 ALA 7ALA 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6K97. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 11Right-handed 310
Helix 2
AA2
A
40 46Right-handed 310
Helix 3
AA3
A
57 72Right-handed alpha
Helix 4
AA4
A
181 192Right-handed alpha
Helix 5
AA5
A
198 201Right-handed 310
Helix 6
AA6
A
221 225Right-handed 310
Helix 7
AA7
A
227 231Right-handed 310
Helix 8
AA8
A
234 250Right-handed alpha
Helix 9
AA9
A
311 318Right-handed alpha
Helix 10
AB1
B
7 11Right-handed 310
Helix 11
AB2
B
40 46Right-handed 310
Helix 12
AB3
B
57 72Right-handed alpha
Helix 13
AB4
B
181 192Right-handed alpha
Helix 14
AB5
B
198 201Right-handed 310
Helix 15
AB6
B
221 225Right-handed 310
Helix 16
AB7
B
227 231Right-handed 310
Helix 17
AB8
B
234 250Right-handed alpha
Helix 18
AB9
B
311 319Right-handed alpha
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There are 4 sheets in PDB entry 6K97. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
31 38anti-parallel
Strand 3
A
93 100anti-parallel
Strand 4
A
109 117anti-parallel
Strand 5
A
124 132anti-parallel
Strand 6
A
76 82anti-parallel
Strand 7
A
256 267anti-parallel
Strand 8
A
298 310anti-parallel
Strand 9
A
286 292anti-parallel
Strand 10
A
274 281anti-parallel
Strand 11
A
212 218anti-parallel
Strand 12
A
203 209anti-parallel
Strand 13
A
178 179anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
48 50anti-parallel
Strand 3
A
194 196anti-parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
31 38anti-parallel
Strand 3
B
93 100anti-parallel
Strand 4
B
109 117anti-parallel
Strand 5
B
124 132anti-parallel
Strand 6
B
76 82anti-parallel
Strand 7
B
256 267anti-parallel
Strand 8
B
298 310anti-parallel
Strand 9
B
286 292anti-parallel
Strand 10
B
274 281anti-parallel
Strand 11
B
212 218anti-parallel
Strand 12
B
203 209anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
48 50anti-parallel
Strand 3
B
194 196anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il