Analysis of interatomic Contacts of Structural Units in PDB entry:
6K9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K9D entry

There is 1 chain in PDB entry 6K9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1ASN 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 6K9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 27Right-handed 310
Helix 2
AA2
A
74 76Right-handed 310
Helix 3
AA3
A
172 183Right-handed alpha
Helix 4
AA4
A
186 189Right-handed 310
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There are 3 sheets in PDB entry 6K9D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
28 39anti-parallel
Strand 3
A
42 52anti-parallel
Strand 4
A
191 216anti-parallel
Strand 5
A
80 87anti-parallel
Strand 6
A
167 171anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
28 39anti-parallel
Strand 3
A
42 52anti-parallel
Strand 4
A
191 216anti-parallel
Strand 5
A
71 72anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
15 18anti-parallel
Strand 3
A
62 66anti-parallel
Strand 4
A
191 216anti-parallel
Strand 5
A
93 103anti-parallel
Strand 6
A
115 124anti-parallel
Strand 7
A
155 160parallel
Strand 8
A
142 149anti-parallel
Strand 9
A
132 139anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il