Analysis of interatomic Contacts of Structural Units in PDB entry:
6K9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6K9P entry

There are 2 chains in PDB entry 6K9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 73LYS 324
G
 MET 1GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6K9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
84 91Right-handed alpha
Helix 2
AA2
B
95 108Right-handed alpha
Helix 3
AA3
B
120 138Right-handed alpha
Helix 4
AA4
B
139 160Right-handed alpha
Helix 5
AA5
B
163 166Right-handed 310
Helix 6
AA6
B
167 181Right-handed alpha
Helix 7
AA7
B
190 200Right-handed alpha
Helix 8
AA8
B
200 222Right-handed alpha
Helix 9
AA9
B
222 235Right-handed alpha
Helix 10
AB1
B
237 246Right-handed alpha
Helix 11
AB2
B
254 266Right-handed alpha
Helix 12
AB3
G
22 35Right-handed alpha
Helix 13
AB4
G
37 39Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 6K9P. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 83first strand
Strand 2
B
109 115anti-parallel
Strand 3
B
317 323anti-parallel
Strand 4
B
310 314anti-parallel
Strand 5
B
269 273parallel
Strand 6
B
287 291anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
12 16first strand
Strand 2
G
2 6anti-parallel
Strand 3
G
66 71parallel
Strand 4
G
41 45anti-parallel
Strand 5
G
48 49anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il