Analysis of interatomic Contacts of Structural Units in PDB entry:
6KA2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KA2 entry

There are 4 chains in PDB entry 6KA2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6ASP 156
B
 VAL 6SER 157
C
 SER 7ASP 156
D
 SER 7ARG 155
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6KA2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 32Right-handed alpha
Helix 2
AA2
A
34 40Right-handed alpha
Helix 3
AA3
A
96 98Right-handed 310
Helix 4
AA4
A
136 156Right-handed alpha
Helix 5
AA5
B
22 32Right-handed alpha
Helix 6
AA6
B
35 40Right-handed alpha
Helix 7
AA7
B
96 98Right-handed 310
Helix 8
AA8
B
136 157Right-handed alpha
Helix 9
AA9
C
22 32Right-handed alpha
Helix 10
AB1
C
34 40Right-handed alpha
Helix 11
AB2
C
96 98Right-handed 310
Helix 12
AB3
C
136 156Right-handed alpha
Helix 13
AB4
D
22 30Right-handed alpha
Helix 14
AB5
D
32 40Right-handed alpha
Helix 15
AB6
D
96 98Right-handed 310
Helix 16
AB7
D
136 154Right-handed alpha
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There are 2 sheets in PDB entry 6KA2. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 51first strand
Strand 2
A
58 67anti-parallel
Strand 3
A
70 81anti-parallel
Strand 4
A
86 94anti-parallel
Strand 5
A
100 111anti-parallel
Strand 6
A
118 128anti-parallel
Strand 7
A
10 19anti-parallel
Strand 8
B
10 19anti-parallel
Strand 9
B
118 128anti-parallel
Strand 10
B
100 111anti-parallel
Strand 11
B
86 94anti-parallel
Strand 12
B
70 81anti-parallel
Strand 13
B
59 67anti-parallel
Strand 14
B
44 51anti-parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 51first strand
Strand 2
C
58 67anti-parallel
Strand 3
C
70 81anti-parallel
Strand 4
C
86 94anti-parallel
Strand 5
C
100 111anti-parallel
Strand 6
C
118 128anti-parallel
Strand 7
C
10 19anti-parallel
Strand 8
D
10 19anti-parallel
Strand 9
D
118 128anti-parallel
Strand 10
D
100 110anti-parallel
Strand 11
D
86 94anti-parallel
Strand 12
D
70 79anti-parallel
Strand 13
D
59 67anti-parallel
Strand 14
D
47 49anti-parallel
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