Analysis of interatomic Contacts of Structural Units in PDB entry:
6KAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KAG entry

There are 3 chains in PDB entry 6KAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 183LEU 356
B
 HIS 422VAL 514
C
 HIS 422VAL 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6KAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
214 227Right-handed alpha
Helix 2
AA2
A
229 248Right-handed alpha
Helix 3
AA3
A
289 302Right-handed alpha
Helix 4
AA4
A
306 323Right-handed alpha
Helix 5
AA5
B
427 431Right-handed 310
Helix 6
AA6
B
439 446Right-handed alpha
Helix 7
AA7
B
447 450Right-handed 310
Helix 8
AA8
B
458 476Right-handed alpha
Helix 9
AA9
B
482 488Right-handed alpha
Helix 10
AB1
B
493 507Right-handed alpha
Helix 11
AB2
C
427 431Right-handed 310
Helix 12
AB3
C
439 446Right-handed alpha
Helix 13
AB4
C
447 450Right-handed 310
Helix 14
AB5
C
458 476Right-handed alpha
Helix 15
AB6
C
482 490Right-handed alpha
Helix 16
AB7
C
493 507Right-handed alpha
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There are 2 sheets in PDB entry 6KAG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 195first strand
Strand 2
A
198 207anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 270first strand
Strand 2
A
273 280anti-parallel
Strand 3
A
352 355anti-parallel
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