Analysis of interatomic Contacts of Structural Units in PDB entry:
6KBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KBC entry

There is 1 chain in PDB entry 6KBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5HIS 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 6KBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 73Right-handed 310
Helix 2
AA2
A
171 175Right-handed alpha
Helix 3
AA3
A
234 237Right-handed 310
Helix 4
AA4
A
263 266Right-handed 310
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There are 3 sheets in PDB entry 6KBC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
99 105anti-parallel
Strand 3
A
113 119anti-parallel
Strand 4
A
132 137anti-parallel
Strand 5
A
143 150anti-parallel
Strand 6
A
154 162anti-parallel
Strand 7
A
181 200anti-parallel
Strand 8
A
176 178anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 96first strand
Strand 2
A
77 85anti-parallel
Strand 3
A
60 69anti-parallel
Strand 4
A
46 54anti-parallel
Strand 5
A
223 231anti-parallel
Strand 6
A
181 200anti-parallel
Strand 7
A
210 216anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 285first strand
Strand 2
A
269 277anti-parallel
Strand 3
A
252 261anti-parallel
Strand 4
A
239 249anti-parallel
Strand 5
A
382 392anti-parallel
Strand 6
A
363 375anti-parallel
Strand 7
A
338 353anti-parallel
Strand 8
A
324 330anti-parallel
Strand 9
A
302 308anti-parallel
Strand 10
A
288 289parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il