Analysis of interatomic Contacts of Structural Units in PDB entry:
6KBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KBD entry

There is 1 chain in PDB entry 6KBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3LYS 805
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6KBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 14Right-handed alpha
Helix 2
AA2
A
16 22Right-handed alpha
Helix 3
AA3
A
30 43Right-handed alpha
Helix 4
AA4
A
48 59Right-handed alpha
Helix 5
AA5
A
71 78Right-handed alpha
Helix 6
AA6
A
79 83Right-handed 310
Helix 7
AA7
A
86 104Right-handed alpha
Helix 8
AA8
A
150 168Right-handed alpha
Helix 9
AA9
A
171 184Right-handed alpha
Helix 10
AB1
A
197 215Right-handed alpha
Helix 11
AB2
A
218 224Right-handed alpha
Helix 12
AB3
A
225 229Right-handed 310
Helix 13
AB4
A
242 248Right-handed alpha
Helix 14
AB5
A
255 282Right-handed alpha
Helix 15
AB6
A
284 288Right-handed 310
Helix 16
AB7
A
303 324Right-handed alpha
Helix 17
AB8
A
339 343Right-handed 310
Helix 18
AB9
A
351 365Right-handed alpha
Helix 19
AC1
A
414 426Right-handed alpha
Helix 20
AC2
A
558 563Right-handed alpha
Helix 21
AC3
A
577 594Right-handed alpha
Helix 22
AC4
A
595 602Right-handed alpha
Helix 23
AC5
A
634 653Right-handed alpha
Helix 24
AC6
A
671 689Right-handed alpha
Helix 25
AC7
A
706 712Right-handed alpha
Helix 26
AC8
A
735 742Right-handed alpha
Helix 27
AC9
A
787 802Right-handed alpha
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There are 4 sheets in PDB entry 6KBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
127 129anti-parallel
Strand 3
A
144 145anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
295 301anti-parallel
Strand 3
A
233 241anti-parallel
Strand 4
A
330 338anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
450 455anti-parallel
Strand 3
A
429 435anti-parallel
Strand 4
A
464 468anti-parallel
Strand 5
A
481 485parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 625first strand
Strand 2
A
628 633anti-parallel
Strand 3
A
549 556anti-parallel
Strand 4
A
659 666anti-parallel
Strand 5
A
694 696parallel
Strand 6
A
704 705anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il