Analysis of interatomic Contacts of Structural Units in PDB entry:
6KBE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KBE entry

There are 3 chains in PDB entry 6KBE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 75	LYS 324
G	MET 1	GLY 75
G	MET 77	ARG 150

There are 16 helices in PDB entry 6KBE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	84	92	Right-handed alpha
Helix 2	AA2	B	95	107	Right-handed alpha
Helix 3	AA3	B	120	138	Right-handed alpha
Helix 4	AA4	B	139	160	Right-handed alpha
Helix 5	AA5	B	163	166	Right-handed 310
Helix 6	AA6	B	167	182	Right-handed alpha
Helix 7	AA7	B	190	199	Right-handed alpha
Helix 8	AA8	B	200	222	Right-handed alpha
Helix 9	AA9	B	222	235	Right-handed alpha
Helix 10	AB1	B	237	245	Right-handed alpha
Helix 11	AB2	B	254	266	Right-handed alpha
Helix 12	AB3	G	22	35	Right-handed alpha
Helix 13	AB4	G	37	39	Right-handed 310
Helix 14	AB5	G	56	60	Right-handed 310
Helix 15	AB6	G	98	111	Right-handed alpha
Helix 16	AB7	G	113	115	Right-handed 310

There are 3 sheets in PDB entry 6KBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	83	first strand
Strand 2	B	109	115	anti-parallel
Strand 3	B	317	323	anti-parallel
Strand 4	B	309	314	anti-parallel
Strand 5	B	269	273	parallel
Strand 6	B	287	291	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	16	first strand
Strand 2	G	2	7	anti-parallel
Strand 3	G	66	71	parallel
Strand 4	G	41	45	anti-parallel
Strand 5	G	48	49	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	88	92	first strand
Strand 2	G	78	82	anti-parallel
Strand 3	G	142	147	parallel
Strand 4	G	117	121	anti-parallel
Strand 5	G	124	125	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KBE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KBE