Analysis of interatomic Contacts of Structural Units in PDB entry:
6KBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KBH entry

There is 1 chain in PDB entry 6KBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 22LEU 786
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6KBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
37 42Right-handed alpha
Helix 3
AA3
A
48 53Right-handed alpha
Helix 4
AA4
A
53 58Right-handed alpha
Helix 5
AA5
A
58 65Right-handed alpha
Helix 6
AA6
A
80 90Right-handed alpha
Helix 7
AA7
A
96 99Right-handed 310
Helix 8
AA8
A
107 117Right-handed alpha
Helix 9
AA9
A
132 140Right-handed alpha
Helix 10
AB1
A
141 144Right-handed 310
Helix 11
AB2
A
145 150Right-handed alpha
Helix 12
AB3
A
152 165Right-handed alpha
Helix 13
AB4
A
175 179Right-handed alpha
Helix 14
AB5
A
182 193Right-handed alpha
Helix 15
AB6
A
195 197Right-handed 310
Helix 16
AB7
A
198 205Right-handed alpha
Helix 17
AB8
A
209 215Right-handed alpha
Helix 18
AB9
A
218 243Right-handed alpha
Helix 19
AC1
A
244 246Right-handed 310
Helix 20
AC2
A
251 263Right-handed alpha
Helix 21
AC3
A
268 282Right-handed alpha
Helix 22
AC4
A
283 301Right-handed alpha
Helix 23
AC5
A
301 311Right-handed alpha
Helix 24
AC6
A
314 326Right-handed alpha
Helix 25
AC7
A
356 361Right-handed alpha
Helix 26
AC8
A
379 383Right-handed 310
Helix 27
AC9
A
388 392Right-handed 310
Helix 28
AD1
A
395 414Right-handed alpha
Helix 29
AD2
A
448 453Right-handed alpha
Helix 30
AD3
A
468 472Right-handed 310
Helix 31
AD4
A
546 555Right-handed alpha
Helix 32
AD5
A
587 602Right-handed alpha
Helix 33
AD6
A
619 626Right-handed alpha
Helix 34
AD7
A
643 648Right-handed alpha
Helix 35
AD8
A
662 673Right-handed alpha
Helix 36
AD9
A
674 676Right-handed 310
Helix 37
AE1
A
677 679Right-handed 310
Helix 38
AE2
A
694 698Right-handed 310
Helix 39
AE3
A
719 727Right-handed alpha
Helix 40
AE4
A
760 767Right-handed alpha
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There are 7 sheets in PDB entry 6KBH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
76 78anti-parallel
Strand 3
A
352 355parallel
Strand 4
A
332 336anti-parallel
Strand 5
A
94 95anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
440 442anti-parallel
Strand 3
A
418 419anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 342first strand
Strand 2
A
345 347anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 523first strand
Strand 2
A
510 515anti-parallel
Strand 3
A
560 567anti-parallel
Strand 4
A
475 486anti-parallel
Strand 5
A
489 496anti-parallel
Strand 6
A
533 536anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 635first strand
Strand 2
A
605 611parallel
Strand 3
A
578 584parallel
Strand 4
A
655 661parallel
Strand 5
A
681 685parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
710 714first strand
Strand 2
A
701 705anti-parallel
Strand 3
A
781 784parallel
Strand 4
A
744 749anti-parallel
Strand 5
A
769 771anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
752 753first strand
Strand 2
A
776 777anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il