Analysis of interatomic Contacts of Structural Units in PDB entry:
6KBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KBR entry

There are 2 chains in PDB entry 6KBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 31ALA 253
C
 THR 12SER 66
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 6KBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 73Right-handed 310
Helix 2
AA2
A
174 183Right-handed alpha
Helix 3
AA3
A
243 253Right-handed alpha
Helix 4
AA4
C
14 18Right-handed 310
Helix 5
AA5
C
40 52Right-handed alpha
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There are 4 sheets in PDB entry 6KBR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
166 171anti-parallel
Strand 3
A
147 152anti-parallel
Strand 4
A
210 213anti-parallel
Strand 5
A
216 224anti-parallel
Strand 6
A
234 239anti-parallel
Strand 7
A
190 194anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
166 171anti-parallel
Strand 3
A
147 152anti-parallel
Strand 4
A
210 213anti-parallel
Strand 5
A
216 224anti-parallel
Strand 6
C
23 24anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 99first strand
Strand 2
A
77 81anti-parallel
Strand 3
A
45 50anti-parallel
Strand 4
A
53 62anti-parallel
Strand 5
A
65 68anti-parallel
Strand 6
A
118 121anti-parallel
Strand 7
A
101 104anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 38first strand
Strand 2
C
30 32anti-parallel
Strand 3
C
57 60anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il