Analysis of interatomic Contacts of Structural Units in PDB entry:
6KBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KBW entry

There are 2 chains in PDB entry 6KBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 446
B
 MET 1ASP 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6KBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 27Right-handed alpha
Helix 2
AA2
A
45 49Right-handed 310
Helix 3
AA3
A
76 80Right-handed 310
Helix 4
AA4
A
86 92Right-handed alpha
Helix 5
AA5
A
100 113Right-handed alpha
Helix 6
AA6
A
114 115Right-handed 310
Helix 7
AA7
A
116 119Right-handed 310
Helix 8
AA8
A
176 180Right-handed 310
Helix 9
AA9
A
188 190Right-handed 310
Helix 10
AB1
A
192 197Right-handed 310
Helix 11
AB2
A
207 221Right-handed alpha
Helix 12
AB3
A
283 287Right-handed 310
Helix 13
AB4
A
301 303Right-handed 310
Helix 14
AB5
A
322 338Right-handed alpha
Helix 15
AB6
A
345 363Right-handed alpha
Helix 16
AB7
A
365 382Right-handed alpha
Helix 17
AB8
A
390 408Right-handed alpha
Helix 18
AB9
A
411 415Right-handed 310
Helix 19
AC1
A
432 436Right-handed 310
Helix 20
AC2
A
440 446Right-handed alpha
Helix 21
AC3
B
12 28Right-handed alpha
Helix 22
AC4
B
45 49Right-handed 310
Helix 23
AC5
B
76 80Right-handed 310
Helix 24
AC6
B
86 92Right-handed alpha
Helix 25
AC7
B
100 115Right-handed alpha
Helix 26
AC8
B
116 119Right-handed 310
Helix 27
AC9
B
176 180Right-handed 310
Helix 28
AD1
B
188 190Right-handed 310
Helix 29
AD2
B
192 197Right-handed 310
Helix 30
AD3
B
207 221Right-handed alpha
Helix 31
AD4
B
283 287Right-handed 310
Helix 32
AD5
B
301 303Right-handed 310
Helix 33
AD6
B
322 338Right-handed alpha
Helix 34
AD7
B
345 363Right-handed alpha
Helix 35
AD8
B
365 383Right-handed alpha
Helix 36
AD9
B
390 408Right-handed alpha
Helix 37
AE1
B
411 415Right-handed 310
Helix 38
AE2
B
432 436Right-handed 310
Helix 39
AE3
B
440 446Right-handed alpha
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There are 12 sheets in PDB entry 6KBW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
34 38parallel
Strand 3
A
5 9parallel
Strand 4
A
158 161parallel
Strand 5
A
311 313parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 133first strand
Strand 2
A
138 145anti-parallel
Strand 3
A
150 156anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
275 276anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
268 271parallel
Strand 3
A
200 204parallel
Strand 4
A
224 228parallel
Strand 5
A
242 245parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 252first strand
Strand 2
A
255 258anti-parallel
Strand 3
A
263 265anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
304 305anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
34 38parallel
Strand 3
B
5 9parallel
Strand 4
B
158 161parallel
Strand 5
B
311 313parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 133first strand
Strand 2
B
138 145anti-parallel
Strand 3
B
150 156anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
275 276anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 186first strand
Strand 2
B
268 271parallel
Strand 3
B
200 204parallel
Strand 4
B
224 228parallel
Strand 5
B
242 245parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 252first strand
Strand 2
B
255 258anti-parallel
Strand 3
B
263 265anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
304 305anti-parallel
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