Analysis of interatomic Contacts of Structural Units in PDB entry:
6KBX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KBX entry

There are 2 chains in PDB entry 6KBX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 CYS 2PHE 227
A
 C -2 T 1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6KBX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
10 16Right-handed alpha
Helix 2
AA2
B
20 24Right-handed 310
Helix 3
AA3
B
80 84Right-handed 310
Helix 4
AA4
B
87 94Right-handed alpha
Helix 5
AA5
B
135 139Right-handed 310
Helix 6
AA6
B
153 159Right-handed 310
Helix 7
AA7
B
168 177Right-handed alpha
Helix 8
AA8
B
181 193Right-handed alpha
Helix 9
AA9
B
195 197Right-handed 310
Helix 10
AB1
B
205 210Right-handed 310
Helix 11
AB2
B
215 220Right-handed 310
Helix 12
AB3
B
223 227Right-handed 310
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There are 4 sheets in PDB entry 6KBX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
4 7anti-parallel
Strand 3
B
102 109anti-parallel
Strand 4
B
112 120anti-parallel
Strand 5
B
199 203anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 50first strand
Strand 2
B
53 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
145 151parallel
Strand 3
B
126 132anti-parallel
Strand 4
B
162 164first strand
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 100first strand
Strand 2
B
126 132anti-parallel
Strand 3
B
145 151anti-parallel
Strand 4
B
166 167first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il