Analysis of interatomic Contacts of Structural Units in PDB entry:
6KBZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KBZ entry

There are 12 chains in PDB entry 6KBZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	CYS 2	PHE 227
A	G -1	T 1
A	G 3	C 7
D	CYS 2	GLU 224
C	G -1	T 1
C	G 3	C 7
F	CYS 2	PHE 227
E	G -1	T 1
E	G 3	C 7
H	CYS 2	VAL 225
G	G -1	T 1
G	G 3	C 7

There are 40 helices in PDB entry 6KBZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	10	16	Right-handed alpha
Helix 2	AA2	B	20	24	Right-handed 310
Helix 3	AA3	B	80	84	Right-handed 310
Helix 4	AA4	B	87	94	Right-handed alpha
Helix 5	AA5	B	135	139	Right-handed 310
Helix 6	AA6	B	153	159	Right-handed 310
Helix 7	AA7	B	168	177	Right-handed alpha
Helix 8	AA8	B	181	193	Right-handed alpha
Helix 9	AA9	B	195	197	Right-handed 310
Helix 10	AB1	B	205	210	Right-handed 310
Helix 11	AB2	B	215	220	Right-handed 310
Helix 12	AB3	D	10	16	Right-handed alpha
Helix 13	AB4	D	20	24	Right-handed 310
Helix 14	AB5	D	87	94	Right-handed alpha
Helix 15	AB6	D	135	139	Right-handed 310
Helix 16	AB7	D	153	159	Right-handed 310
Helix 17	AB8	D	168	177	Right-handed alpha
Helix 18	AB9	D	181	192	Right-handed alpha
Helix 19	AC1	D	195	197	Right-handed 310
Helix 20	AC2	D	205	210	Right-handed 310
Helix 21	AC3	D	215	220	Right-handed 310
Helix 22	AC4	F	10	16	Right-handed alpha
Helix 23	AC5	F	20	24	Right-handed 310
Helix 24	AC6	F	87	94	Right-handed alpha
Helix 25	AC7	F	135	139	Right-handed 310
Helix 26	AC8	F	153	159	Right-handed 310
Helix 27	AC9	F	168	177	Right-handed alpha
Helix 28	AD1	F	181	193	Right-handed alpha
Helix 29	AD2	F	195	197	Right-handed 310
Helix 30	AD3	F	205	210	Right-handed 310
Helix 31	AD4	F	215	220	Right-handed 310
Helix 32	AD5	H	10	16	Right-handed alpha
Helix 33	AD6	H	87	94	Right-handed alpha
Helix 34	AD7	H	135	139	Right-handed 310
Helix 35	AD8	H	153	159	Right-handed 310
Helix 36	AD9	H	168	177	Right-handed alpha
Helix 37	AE1	H	181	193	Right-handed alpha
Helix 38	AE2	H	195	197	Right-handed 310
Helix 39	AE3	H	205	210	Right-handed 310
Helix 40	AE4	H	215	220	Right-handed 310

There are 16 sheets in PDB entry 6KBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	5	7	anti-parallel
Strand 3	B	102	109	anti-parallel
Strand 4	B	112	120	anti-parallel
Strand 5	B	199	203	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	50	first strand
Strand 2	B	53	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	77	first strand
Strand 2	B	145	151	parallel
Strand 3	B	126	132	anti-parallel
Strand 4	B	162	164	first strand

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	100	first strand
Strand 2	B	126	132	anti-parallel
Strand 3	B	145	151	anti-parallel
Strand 4	B	166	167	first strand

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	5	7	anti-parallel
Strand 3	D	102	109	anti-parallel
Strand 4	D	112	120	anti-parallel
Strand 5	D	199	203	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	50	first strand
Strand 2	D	53	60	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	145	151	parallel
Strand 3	D	126	132	anti-parallel
Strand 4	D	162	164	first strand

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	100	first strand
Strand 2	D	126	132	anti-parallel
Strand 3	D	145	151	anti-parallel
Strand 4	D	166	167	first strand

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	5	7	anti-parallel
Strand 3	F	102	109	anti-parallel
Strand 4	F	112	120	anti-parallel
Strand 5	F	199	203	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	50	first strand
Strand 2	F	53	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	77	first strand
Strand 2	F	145	151	parallel
Strand 3	F	126	132	anti-parallel
Strand 4	F	162	164	first strand

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	100	first strand
Strand 2	F	126	132	anti-parallel
Strand 3	F	145	151	anti-parallel
Strand 4	F	166	167	first strand

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	38	first strand
Strand 2	H	5	7	anti-parallel
Strand 3	H	102	109	anti-parallel
Strand 4	H	112	120	anti-parallel
Strand 5	H	199	203	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	50	first strand
Strand 2	H	53	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	75	77	first strand
Strand 2	H	145	151	parallel
Strand 3	H	126	132	anti-parallel
Strand 4	H	162	164	first strand

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	100	first strand
Strand 2	H	126	132	anti-parallel
Strand 3	H	145	151	anti-parallel
Strand 4	H	166	167	first strand

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KBZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KBZ