Analysis of interatomic Contacts of Structural Units in PDB entry:
6KC7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KC7 entry

There are 4 chains in PDB entry 6KC7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8ARG 1082
B
 A 17 A 133
C
 T 1 T 19
D
 A 1 A 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6KC7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 89Right-handed alpha
Helix 2
AA2
A
109 117Right-handed alpha
Helix 3
AA3
A
123 137Right-handed alpha
Helix 4
AA4
A
158 171Right-handed alpha
Helix 5
AA5
A
176 188Right-handed alpha
Helix 6
AA6
A
204 223Right-handed alpha
Helix 7
AA7
A
228 241Right-handed alpha
Helix 8
AA8
A
271 284Right-handed alpha
Helix 9
AA9
A
298 307Right-handed alpha
Helix 10
AB1
A
307 312Right-handed alpha
Helix 11
AB2
A
319 324Right-handed alpha
Helix 12
AB3
A
350 358Right-handed alpha
Helix 13
AB4
A
375 389Right-handed alpha
Helix 14
AB5
A
391 403Right-handed alpha
Helix 15
AB6
A
474 496Right-handed alpha
Helix 16
AB7
A
512 541Right-handed alpha
Helix 17
AB8
A
549 562Right-handed alpha
Helix 18
AB9
A
574 578Right-handed 310
Helix 19
AC1
A
599 601Right-handed 310
Helix 20
AC2
A
618 623Right-handed alpha
Helix 21
AC3
A
629 642Right-handed alpha
Helix 22
AC4
A
645 653Right-handed alpha
Helix 23
AC5
A
658 668Right-handed alpha
Helix 24
AC6
A
671 684Right-handed alpha
Helix 25
AC7
A
699 710Right-handed alpha
Helix 26
AC8
A
721 732Right-handed alpha
Helix 27
AC9
A
734 750Right-handed alpha
Helix 28
AD1
A
778 789Right-handed alpha
Helix 29
AD2
A
802 814Right-handed alpha
Helix 30
AD3
A
817 821Right-handed 310
Helix 31
AD4
A
865 867Right-handed 310
Helix 32
AD5
A
868 874Right-handed alpha
Helix 33
AD6
A
881 895Right-handed alpha
Helix 34
AD7
A
898 903Right-handed alpha
Helix 35
AD8
A
966 971Right-handed alpha
Helix 36
AD9
A
984 988Right-handed 310
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There are 7 sheets in PDB entry 6KC7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 697first strand
Strand 2
A
500 505parallel
Strand 3
A
11 17parallel
Strand 4
A
21 29anti-parallel
Strand 5
A
35 45anti-parallel
Strand 6
A
831 832parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
294 295anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 588first strand
Strand 2
A
603 607anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
843 849first strand
Strand 2
A
940 944anti-parallel
Strand 3
A
933 935anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
857 863first strand
Strand 2
A
922 928anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 964first strand
Strand 2
A
949 955anti-parallel
Strand 3
A
996 1001anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1046 1050first strand
Strand 2
A
1030 1033anti-parallel
Strand 3
A
1015 1023anti-parallel
Strand 4
A
1006 1010anti-parallel
Strand 5
A
1057 1060anti-parallel
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