Analysis of interatomic Contacts of Structural Units in PDB entry:
6KCF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KCF entry

There are 4 chains in PDB entry 6KCF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 6	LEU 466
B	VAL 6	LEU 466
C	VAL 6	LEU 466
D	VAL 6	LEU 466

There are 53 helices in PDB entry 6KCF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	11	Right-handed 310
Helix 2	AA2	A	23	27	Right-handed 310
Helix 3	AA3	A	53	63	Right-handed alpha
Helix 4	AA4	A	74	88	Right-handed alpha
Helix 5	AA5	A	231	238	Right-handed alpha
Helix 6	AA6	A	252	266	Right-handed alpha
Helix 7	AA7	A	278	289	Right-handed alpha
Helix 8	AA8	A	304	310	Right-handed alpha
Helix 9	AA9	A	314	329	Right-handed alpha
Helix 10	AB1	A	341	352	Right-handed alpha
Helix 11	AB2	A	359	363	Right-handed 310
Helix 12	AB3	A	425	445	Right-handed alpha
Helix 13	AB4	A	448	456	Right-handed alpha
Helix 14	AB5	B	9	11	Right-handed 310
Helix 15	AB6	B	23	27	Right-handed 310
Helix 16	AB7	B	53	63	Right-handed alpha
Helix 17	AB8	B	74	87	Right-handed alpha
Helix 18	AB9	B	231	238	Right-handed alpha
Helix 19	AC1	B	252	266	Right-handed alpha
Helix 20	AC2	B	278	289	Right-handed alpha
Helix 21	AC3	B	304	309	Right-handed alpha
Helix 22	AC4	B	314	321	Right-handed alpha
Helix 23	AC5	B	322	330	Right-handed alpha
Helix 24	AC6	B	341	351	Right-handed alpha
Helix 25	AC7	B	359	363	Right-handed 310
Helix 26	AC8	B	425	445	Right-handed alpha
Helix 27	AC9	B	448	456	Right-handed alpha
Helix 28	AD1	B	462	466	Right-handed 310
Helix 29	AD2	C	9	11	Right-handed 310
Helix 30	AD3	C	53	63	Right-handed alpha
Helix 31	AD4	C	74	87	Right-handed alpha
Helix 32	AD5	C	229	231	Right-handed 310
Helix 33	AD6	C	232	237	Right-handed alpha
Helix 34	AD7	C	252	266	Right-handed alpha
Helix 35	AD8	C	278	288	Right-handed alpha
Helix 36	AD9	C	304	310	Right-handed alpha
Helix 37	AE1	C	314	330	Right-handed alpha
Helix 38	AE2	C	341	351	Right-handed alpha
Helix 39	AE3	C	359	363	Right-handed 310
Helix 40	AE4	C	425	445	Right-handed alpha
Helix 41	AE5	C	448	456	Right-handed alpha
Helix 42	AE6	D	9	11	Right-handed 310
Helix 43	AE7	D	53	63	Right-handed alpha
Helix 44	AE8	D	75	86	Right-handed alpha
Helix 45	AE9	D	232	237	Right-handed alpha
Helix 46	AF1	D	252	266	Right-handed alpha
Helix 47	AF2	D	278	288	Right-handed alpha
Helix 48	AF3	D	304	309	Right-handed alpha
Helix 49	AF4	D	314	327	Right-handed alpha
Helix 50	AF5	D	341	352	Right-handed alpha
Helix 51	AF6	D	359	363	Right-handed 310
Helix 52	AF7	D	425	445	Right-handed alpha
Helix 53	AF8	D	448	456	Right-handed alpha

There are 12 sheets in PDB entry 6KCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	458	460	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	37	39	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	66	69	parallel
Strand 3	A	219	222	parallel
Strand 4	A	242	246	parallel
Strand 5	A	271	276	parallel
Strand 6	A	292	295	parallel
Strand 7	A	332	336	parallel
Strand 8	A	355	358	parallel
Strand 9	A	43	45	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	458	460	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	34	first strand
Strand 2	B	37	39	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	66	69	parallel
Strand 3	B	219	222	parallel
Strand 4	B	242	246	parallel
Strand 5	B	271	276	parallel
Strand 6	B	292	295	parallel
Strand 7	B	332	336	parallel
Strand 8	B	355	358	parallel
Strand 9	B	43	45	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	458	460	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	37	39	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	355	358	parallel
Strand 3	C	332	336	parallel
Strand 4	C	292	295	parallel
Strand 5	C	271	276	parallel
Strand 6	C	242	246	parallel
Strand 7	C	219	222	parallel
Strand 8	C	68	69	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	458	460	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	37	39	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	66	69	parallel
Strand 3	D	219	222	parallel
Strand 4	D	242	246	parallel
Strand 5	D	271	276	parallel
Strand 6	D	292	295	parallel
Strand 7	D	332	336	parallel
Strand 8	D	355	358	parallel
Strand 9	D	43	45	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KCF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KCF