Analysis of interatomic Contacts of Structural Units in PDB entry:
6KD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KD0 entry

There is 1 chain in PDB entry 6KD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6KD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 25Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
45 55Right-handed alpha
Helix 4
AA4
A
56 58Right-handed 310
Helix 5
AA5
A
60 62Right-handed 310
Helix 6
AA6
A
110 113Right-handed 310
Helix 7
AA7
A
114 126Right-handed alpha
Helix 8
AA8
A
143 159Right-handed alpha
Helix 9
AA9
A
160 164Right-handed 310
Helix 10
AB1
A
166 169Right-handed 310
Helix 11
AB2
A
177 193Right-handed alpha
Helix 12
AB3
A
194 197Right-handed 310
Helix 13
AB4
A
213 217Right-handed 310
Helix 14
AB5
A
218 225Right-handed 310
Helix 15
AB6
A
226 231Right-handed alpha
Helix 16
AB7
A
238 250Right-handed alpha
Helix 17
AB8
A
260 264Right-handed 310
Helix 18
AB9
A
283 297Right-handed alpha
Helix 19
AC1
A
312 317Right-handed alpha
Helix 20
AC2
A
320 339Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6KD0.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 73first strand
Strand 2
A
76 85anti-parallel
Strand 3
A
128 132anti-parallel
Strand 4
A
97 101parallel
Strand 5
A
171 176parallel
Strand 6
A
203 207parallel
Strand 7
A
273 280parallel
Strand 8
A
301 310parallel
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