Analysis of interatomic Contacts of Structural Units in PDB entry:
6KD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KD3 entry

There are 2 chains in PDB entry 6KD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 12SER 308
B
 THR 12SER 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6KD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 50Right-handed alpha
Helix 2
AA2
A
63 76Right-handed alpha
Helix 3
AA3
A
109 129Right-handed alpha
Helix 4
AA4
A
181 193Right-handed alpha
Helix 5
AA5
A
227 241Right-handed alpha
Helix 6
AA6
A
250 258Right-handed alpha
Helix 7
AA7
A
282 290Right-handed alpha
Helix 8
AA8
A
291 307Right-handed alpha
Helix 9
AA9
B
44 50Right-handed alpha
Helix 10
AB1
B
60 75Right-handed alpha
Helix 11
AB2
B
109 128Right-handed alpha
Helix 12
AB3
B
181 190Right-handed alpha
Helix 13
AB4
B
226 239Right-handed alpha
Helix 14
AB5
B
248 259Right-handed alpha
Helix 15
AB6
B
272 276Right-handed 310
Helix 16
AB7
B
282 291Right-handed alpha
Helix 17
AB8
B
291 306Right-handed alpha
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There are 5 sheets in PDB entry 6KD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
35 36anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 106first strand
Strand 2
A
54 58parallel
Strand 3
A
134 139parallel
Strand 4
A
263 267parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
204 207parallel
Strand 3
A
242 246parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 99first strand
Strand 2
B
102 106anti-parallel
Strand 3
B
54 58parallel
Strand 4
B
134 142parallel
Strand 5
B
263 271parallel
Strand 6
B
152 158anti-parallel
Strand 7
B
202 207parallel
Strand 8
B
242 246parallel
Strand 9
B
134 142anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
175 176anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il