Analysis of interatomic Contacts of Structural Units in PDB entry:
6KD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KD5 entry

There are 3 chains in PDB entry 6KD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 193THR 323
B
 ILE 326LEU 563
C
 ARG 2LYS 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 6KD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
220 224Right-handed 310
Helix 2
AA2
A
256 266Right-handed alpha
Helix 3
AA3
B
365 370Right-handed 310
Helix 4
AA4
B
476 481Right-handed alpha
Helix 5
AA5
B
550 561Right-handed alpha
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There are 5 sheets in PDB entry 6KD5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
B
397 402parallel
Strand 3
B
416 420anti-parallel
Strand 4
B
360 363anti-parallel
Strand 5
B
348 357anti-parallel
Strand 6
B
340 345anti-parallel
Strand 7
B
379 383anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
235 240anti-parallel
Strand 3
A
245 247anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 278first strand
Strand 2
A
308 313anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
299 302anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 331first strand
Strand 2
B
468 475anti-parallel
Strand 3
B
494 498anti-parallel
Strand 4
B
542 546anti-parallel
Strand 5
B
522 531anti-parallel
Strand 6
B
514 519anti-parallel
Strand 7
B
447 452anti-parallel
Strand 8
B
468 475anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il