Analysis of interatomic Contacts of Structural Units in PDB entry:
6KD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KD7 entry

There is 1 chain in PDB entry 6KD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 6KD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 19Right-handed alpha
Helix 2
AA2
A
24 36Right-handed alpha
Helix 3
AA3
A
41 54Right-handed alpha
Helix 4
AA4
A
57 83Right-handed alpha
Helix 5
AA5
A
93 98Right-handed alpha
Helix 6
AA6
A
99 117Right-handed alpha
Helix 7
AA7
A
122 151Right-handed alpha
Helix 8
AA8
A
157 170Right-handed alpha
Helix 9
AA9
A
170 184Right-handed alpha
Helix 10
AB1
A
187 216Right-handed alpha
Helix 11
AB2
A
226 231Right-handed alpha
Helix 12
AB3
A
235 242Right-handed alpha
Helix 13
AB4
A
247 255Right-handed alpha
Helix 14
AB5
A
256 257Right-handed 310
Helix 15
AB6
A
258 262Right-handed 310
Helix 16
AB7
A
263 281Right-handed alpha
Helix 17
AB8
A
282 304Right-handed alpha
Helix 18
AB9
A
308 323Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 6KD7.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
91 92anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il