Analysis of interatomic Contacts of Structural Units in PDB entry:
6KDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KDA entry

There are 6 chains in PDB entry 6KDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 570GLU 853
B
 GLY 176SER 379
C
 MET 178SER 379
D
 MET 570GLU 853
E
 G 422 T 446
F
 G 422 T 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6KDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
585 595Right-handed alpha
Helix 2
AA2
A
607 618Right-handed alpha
Helix 3
AA3
A
627 631Right-handed 310
Helix 4
AA4
A
632 640Right-handed alpha
Helix 5
AA5
A
670 683Right-handed alpha
Helix 6
AA6
A
703 714Right-handed alpha
Helix 7
AA7
A
724 726Right-handed 310
Helix 8
AA8
A
755 760Right-handed alpha
Helix 9
AA9
A
777 782Right-handed 310
Helix 10
AB1
A
801 810Right-handed alpha
Helix 11
AB2
A
822 832Right-handed alpha
Helix 12
AB3
A
835 844Right-handed alpha
Helix 13
AB4
A
845 849Right-handed 310
Helix 14
AB5
B
199 204Right-handed alpha
Helix 15
AB6
B
205 207Right-handed 310
Helix 16
AB7
B
223 227Right-handed 310
Helix 17
AB8
B
228 235Right-handed alpha
Helix 18
AB9
B
255 271Right-handed alpha
Helix 19
AC1
B
291 302Right-handed alpha
Helix 20
AC2
B
339 351Right-handed alpha
Helix 21
AC3
B
360 366Right-handed alpha
Helix 22
AC4
B
367 374Right-handed 310
Helix 23
AC5
C
199 204Right-handed alpha
Helix 24
AC6
C
205 207Right-handed 310
Helix 25
AC7
C
223 227Right-handed 310
Helix 26
AC8
C
228 236Right-handed alpha
Helix 27
AC9
C
255 271Right-handed alpha
Helix 28
AD1
C
291 302Right-handed alpha
Helix 29
AD2
C
339 350Right-handed alpha
Helix 30
AD3
C
361 367Right-handed alpha
Helix 31
AD4
C
368 374Right-handed 310
Helix 32
AD5
D
585 594Right-handed alpha
Helix 33
AD6
D
607 618Right-handed alpha
Helix 34
AD7
D
627 631Right-handed 310
Helix 35
AD8
D
632 640Right-handed alpha
Helix 36
AD9
D
668 670Right-handed 310
Helix 37
AE1
D
671 683Right-handed alpha
Helix 38
AE2
D
703 714Right-handed alpha
Helix 39
AE3
D
724 726Right-handed 310
Helix 40
AE4
D
755 760Right-handed alpha
Helix 41
AE5
D
801 809Right-handed alpha
Helix 42
AE6
D
822 832Right-handed alpha
Helix 43
AE7
D
835 844Right-handed alpha
Helix 44
AE8
D
845 849Right-handed 310
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There are 6 sheets in PDB entry 6KDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 624first strand
Strand 2
A
598 604parallel
Strand 3
A
575 580parallel
Strand 4
A
644 647parallel
Strand 5
A
693 699parallel
Strand 6
A
732 737anti-parallel
Strand 7
A
719 722anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 766first strand
Strand 2
A
791 793anti-parallel
Strand 3
A
796 798anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 221first strand
Strand 2
B
192 195parallel
Strand 3
B
240 244parallel
Strand 4
B
281 286parallel
Strand 5
B
319 325anti-parallel
Strand 6
B
307 311anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 221first strand
Strand 2
C
192 195parallel
Strand 3
C
240 244parallel
Strand 4
C
281 286parallel
Strand 5
C
319 325anti-parallel
Strand 6
C
307 311anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
623 624first strand
Strand 2
D
598 604parallel
Strand 3
D
575 580parallel
Strand 4
D
644 648parallel
Strand 5
D
693 699parallel
Strand 6
D
732 737anti-parallel
Strand 7
D
719 722anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
764 766first strand
Strand 2
D
791 793anti-parallel
Strand 3
D
796 798anti-parallel
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