Analysis of interatomic Contacts of Structural Units in PDB entry:
6KDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KDC entry

There is 1 chain in PDB entry 6KDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 465
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6KDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 38Right-handed alpha
Helix 2
AA2
A
40 46Right-handed alpha
Helix 3
AA3
A
53 57Right-handed 310
Helix 4
AA4
A
59 74Right-handed alpha
Helix 5
AA5
A
84 89Right-handed alpha
Helix 6
AA6
A
101 110Right-handed alpha
Helix 7
AA7
A
111 128Right-handed alpha
Helix 8
AA8
A
147 154Right-handed alpha
Helix 9
AA9
A
160 164Right-handed 310
Helix 10
AB1
A
165 183Right-handed alpha
Helix 11
AB2
A
194 204Right-handed alpha
Helix 12
AB3
A
205 209Right-handed 310
Helix 13
AB4
A
216 240Right-handed alpha
Helix 14
AB5
A
262 274Right-handed alpha
Helix 15
AB6
A
274 282Right-handed alpha
Helix 16
AB7
A
283 285Right-handed 310
Helix 17
AB8
A
345 360Right-handed alpha
Helix 18
AB9
A
377 395Right-handed alpha
Helix 19
AC1
A
412 419Right-handed 310
Helix 20
AC2
A
436 449Right-handed alpha
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There are 3 sheets in PDB entry 6KDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
78 82parallel
Strand 3
A
131 135parallel
Strand 4
A
188 193parallel
Strand 5
A
246 251parallel
Strand 6
A
288 291parallel
Strand 7
A
363 367parallel
Strand 8
A
399 404parallel
Strand 9
A
7 11parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
295 306parallel
Strand 3
A
311 316anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 427first strand
Strand 2
A
432 435anti-parallel
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