Analysis of interatomic Contacts of Structural Units in PDB entry:
6KDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KDD entry

There is 1 chain in PDB entry 6KDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12GLU 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6KDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
44 54Right-handed alpha
Helix 3
AA3
A
63 68Right-handed 310
Helix 4
AA4
A
77 94Right-handed alpha
Helix 5
AA5
A
105 111Right-handed alpha
Helix 6
AA6
A
111 130Right-handed alpha
Helix 7
AA7
A
150 169Right-handed alpha
Helix 8
AA8
A
178 183Right-handed alpha
Helix 9
AA9
A
184 190Right-handed 310
Helix 10
AB1
A
207 212Right-handed alpha
Helix 11
AB2
A
231 253Right-handed alpha
Helix 12
AB3
A
268 286Right-handed alpha
Helix 13
AB4
A
312 319Right-handed alpha
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There are 2 sheets in PDB entry 6KDD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
57 60parallel
Strand 3
A
97 101parallel
Strand 4
A
137 140parallel
Strand 5
A
174 177parallel
Strand 6
A
198 204parallel
Strand 7
A
256 261parallel
Strand 8
A
289 292parallel
Strand 9
A
22 25parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
308 309anti-parallel
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