Analysis of interatomic Contacts of Structural Units in PDB entry:
6KDL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KDL entry

There are 4 chains in PDB entry 6KDL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 571	GLU 853
B	MET 178	SER 379
C	MET 178	SER 379
D	ARG 571	GLU 853

There are 37 helices in PDB entry 6KDL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	585	594	Right-handed alpha
Helix 2	AA2	A	607	617	Right-handed alpha
Helix 3	AA3	A	627	631	Right-handed 310
Helix 4	AA4	A	632	640	Right-handed alpha
Helix 5	AA5	A	670	683	Right-handed alpha
Helix 6	AA6	A	703	715	Right-handed alpha
Helix 7	AA7	A	724	726	Right-handed 310
Helix 8	AA8	A	755	760	Right-handed alpha
Helix 9	AA9	A	801	810	Right-handed alpha
Helix 10	AB1	A	822	832	Right-handed alpha
Helix 11	AB2	A	835	844	Right-handed alpha
Helix 12	AB3	A	845	849	Right-handed 310
Helix 13	AB4	B	199	204	Right-handed alpha
Helix 14	AB5	B	228	235	Right-handed alpha
Helix 15	AB6	B	255	271	Right-handed alpha
Helix 16	AB7	B	291	303	Right-handed alpha
Helix 17	AB8	B	339	353	Right-handed alpha
Helix 18	AB9	B	363	374	Right-handed 310
Helix 19	AC1	C	199	207	Right-handed alpha
Helix 20	AC2	C	228	236	Right-handed alpha
Helix 21	AC3	C	255	271	Right-handed alpha
Helix 22	AC4	C	291	303	Right-handed alpha
Helix 23	AC5	C	339	353	Right-handed alpha
Helix 24	AC6	C	363	374	Right-handed 310
Helix 25	AC7	D	585	594	Right-handed alpha
Helix 26	AC8	D	607	617	Right-handed alpha
Helix 27	AC9	D	627	631	Right-handed 310
Helix 28	AD1	D	632	640	Right-handed alpha
Helix 29	AD2	D	668	670	Right-handed 310
Helix 30	AD3	D	671	683	Right-handed alpha
Helix 31	AD4	D	703	715	Right-handed alpha
Helix 32	AD5	D	724	726	Right-handed 310
Helix 33	AD6	D	755	760	Right-handed alpha
Helix 34	AD7	D	801	810	Right-handed alpha
Helix 35	AD8	D	822	832	Right-handed alpha
Helix 36	AD9	D	835	844	Right-handed alpha
Helix 37	AE1	D	845	849	Right-handed 310

There are 6 sheets in PDB entry 6KDL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	624	first strand
Strand 2	A	598	604	parallel
Strand 3	A	575	580	parallel
Strand 4	A	644	647	parallel
Strand 5	A	693	699	parallel
Strand 6	A	732	737	anti-parallel
Strand 7	A	719	722	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	764	766	first strand
Strand 2	A	791	793	anti-parallel
Strand 3	A	796	798	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	192	195	parallel
Strand 3	B	240	244	parallel
Strand 4	B	281	286	parallel
Strand 5	B	322	325	anti-parallel
Strand 6	B	307	308	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	221	first strand
Strand 2	C	192	195	parallel
Strand 3	C	240	244	parallel
Strand 4	C	281	286	parallel
Strand 5	C	322	325	anti-parallel
Strand 6	C	307	308	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	623	624	first strand
Strand 2	D	598	604	parallel
Strand 3	D	575	580	parallel
Strand 4	D	644	647	parallel
Strand 5	D	693	699	parallel
Strand 6	D	732	737	anti-parallel
Strand 7	D	719	722	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	764	766	first strand
Strand 2	D	791	793	anti-parallel
Strand 3	D	796	798	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KDL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KDL