Analysis of interatomic Contacts of Structural Units in PDB entry:
6KDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KDR entry

There are 4 chains in PDB entry 6KDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 59HIS 278
B
 HIS 59HIS 278
D
 GLY 1GLN 6
E
 GLY 1PHE 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6KDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 78Right-handed alpha
Helix 2
AA2
A
82 87Right-handed alpha
Helix 3
AA3
A
90 92Right-handed 310
Helix 4
AA4
A
93 109Right-handed alpha
Helix 5
AA5
A
128 134Right-handed alpha
Helix 6
AA6
A
148 159Right-handed alpha
Helix 7
AA7
A
160 164Right-handed 310
Helix 8
AA8
A
173 177Right-handed 310
Helix 9
AA9
A
192 196Right-handed 310
Helix 10
AB1
A
197 211Right-handed alpha
Helix 11
AB2
A
241 252Right-handed alpha
Helix 12
AB3
B
64 77Right-handed alpha
Helix 13
AB4
B
82 87Right-handed alpha
Helix 14
AB5
B
90 92Right-handed 310
Helix 15
AB6
B
93 107Right-handed alpha
Helix 16
AB7
B
128 134Right-handed alpha
Helix 17
AB8
B
148 159Right-handed alpha
Helix 18
AB9
B
162 164Right-handed 310
Helix 19
AC1
B
173 177Right-handed 310
Helix 20
AC2
B
192 196Right-handed 310
Helix 21
AC3
B
197 211Right-handed alpha
Helix 22
AC4
B
241 252Right-handed alpha
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There are 4 sheets in PDB entry 6KDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
B
230 232parallel
Strand 3
B
237 239anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 171first strand
Strand 2
A
141 146parallel
Strand 3
A
119 123parallel
Strand 4
A
184 190parallel
Strand 5
A
212 223parallel
Strand 6
A
272 277anti-parallel
Strand 7
A
256 261anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
229 232anti-parallel
Strand 3
B
60 63parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 170first strand
Strand 2
B
141 145parallel
Strand 3
B
119 123parallel
Strand 4
B
184 190parallel
Strand 5
B
212 223parallel
Strand 6
B
272 277anti-parallel
Strand 7
B
256 261anti-parallel
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