Analysis of interatomic Contacts of Structural Units in PDB entry:
6KF3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KF3 entry

There are 11 chains in PDB entry 6KF3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 5	GLY 904
B	GLU 9	ARG 1122
C	VAL 2	LYS 389
D	VAL 2	ALA 258
E	MET 1	LYS 181
F	MET 1	GLU 122
H	GLU 6	GLU 81
K	PHE 2	SER 57
L	MET 1	GLU 94
N	MET 1	TYR 65
P	TYR 6	ILE 49

There are103 helices in PDB entry 6KF3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	25	Right-handed alpha
Helix 2	AA2	A	88	97	Right-handed alpha
Helix 3	AA3	A	109	123	Right-handed alpha
Helix 4	AA4	A	126	143	Right-handed alpha
Helix 5	AA5	A	182	191	Right-handed alpha
Helix 6	AA6	A	192	193	Right-handed 310
Helix 7	AA7	A	194	198	Right-handed 310
Helix 8	AA8	A	209	212	Right-handed 310
Helix 9	AA9	A	239	261	Right-handed alpha
Helix 10	AB1	A	266	284	Right-handed alpha
Helix 11	AB2	A	303	309	Right-handed alpha
Helix 12	AB3	A	346	351	Right-handed alpha
Helix 13	AB4	A	363	373	Right-handed alpha
Helix 14	AB5	A	474	485	Right-handed alpha
Helix 15	AB6	A	486	491	Right-handed 310
Helix 16	AB7	A	504	510	Right-handed alpha
Helix 17	AB8	A	510	515	Right-handed alpha
Helix 18	AB9	A	522	533	Right-handed alpha
Helix 19	AC1	A	555	560	Right-handed alpha
Helix 20	AC2	A	578	592	Right-handed alpha
Helix 21	AC3	A	634	639	Right-handed alpha
Helix 22	AC4	A	645	663	Right-handed alpha
Helix 23	AC5	A	669	674	Right-handed 310
Helix 24	AC6	A	676	703	Right-handed alpha
Helix 25	AC7	A	713	741	Right-handed alpha
Helix 26	AC8	A	748	753	Right-handed alpha
Helix 27	AC9	A	813	850	Right-handed alpha
Helix 28	AD1	A	889	904	Right-handed alpha
Helix 29	AD2	B	15	26	Right-handed alpha
Helix 30	AD3	B	32	44	Right-handed alpha
Helix 31	AD4	B	45	54	Right-handed alpha
Helix 32	AD5	B	90	94	Right-handed 310
Helix 33	AD6	B	141	146	Right-handed alpha
Helix 34	AD7	B	228	236	Right-handed alpha
Helix 35	AD8	B	239	248	Right-handed alpha
Helix 36	AD9	B	250	266	Right-handed alpha
Helix 37	AE1	B	272	282	Right-handed alpha
Helix 38	AE2	B	287	302	Right-handed alpha
Helix 39	AE3	B	309	311	Right-handed 310
Helix 40	AE4	B	312	333	Right-handed alpha
Helix 41	AE5	B	342	346	Right-handed 310
Helix 42	AE6	B	350	376	Right-handed alpha
Helix 43	AE7	B	386	397	Right-handed alpha
Helix 44	AE8	B	400	412	Right-handed alpha
Helix 45	AE9	B	432	437	Right-handed alpha
Helix 46	AF1	B	459	463	Right-handed 310
Helix 47	AF2	B	494	504	Right-handed alpha
Helix 48	AF3	B	534	547	Right-handed alpha
Helix 49	AF4	B	595	601	Right-handed alpha
Helix 50	AF5	B	605	610	Right-handed alpha
Helix 51	AF6	B	621	626	Right-handed 310
Helix 52	AF7	B	664	672	Right-handed alpha
Helix 53	AF8	B	683	687	Right-handed 310
Helix 54	AF9	B	746	750	Right-handed 310
Helix 55	AG1	B	829	834	Right-handed alpha
Helix 56	AG2	B	918	923	Right-handed alpha
Helix 57	AG3	B	924	940	Right-handed alpha
Helix 58	AG4	B	953	961	Right-handed alpha
Helix 59	AG5	B	1000	1004	Right-handed 310
Helix 60	AG6	B	1034	1042	Right-handed alpha
Helix 61	AG7	B	1046	1054	Right-handed alpha
Helix 62	AG8	B	1099	1111	Right-handed alpha
Helix 63	AG9	C	3	15	Right-handed alpha
Helix 64	AH1	C	19	33	Right-handed alpha
Helix 65	AH2	C	39	56	Right-handed alpha
Helix 66	AH3	C	63	74	Right-handed alpha
Helix 67	AH4	C	97	106	Right-handed alpha
Helix 68	AH5	C	127	140	Right-handed alpha
Helix 69	AH6	C	175	181	Right-handed alpha
Helix 70	AH7	C	210	215	Right-handed alpha
Helix 71	AH8	C	217	222	Right-handed alpha
Helix 72	AH9	C	249	254	Right-handed alpha
Helix 73	AI1	C	269	276	Right-handed alpha
Helix 74	AI2	C	277	296	Right-handed alpha
Helix 75	AI3	C	301	313	Right-handed alpha
Helix 76	AI4	C	363	368	Right-handed alpha
Helix 77	AI5	C	373	378	Right-handed 310
Helix 78	AI6	D	22	36	Right-handed alpha
Helix 79	AI7	D	55	65	Right-handed alpha
Helix 80	AI8	D	102	104	Right-handed 310
Helix 81	AI9	D	143	147	Right-handed 310
Helix 82	AJ1	D	168	178	Right-handed alpha
Helix 83	AJ2	D	200	207	Right-handed 310
Helix 84	AJ3	D	234	258	Right-handed alpha
Helix 85	AJ4	E	21	35	Right-handed alpha
Helix 86	AJ5	E	173	179	Right-handed alpha
Helix 87	AJ6	F	13	26	Right-handed alpha
Helix 88	AJ7	F	38	51	Right-handed alpha
Helix 89	AJ8	F	55	68	Right-handed alpha
Helix 90	AJ9	F	74	85	Right-handed alpha
Helix 91	AK1	F	88	96	Right-handed alpha
Helix 92	AK2	F	97	99	Right-handed 310
Helix 93	AK3	F	104	115	Right-handed alpha
Helix 94	AK4	H	24	34	Right-handed alpha
Helix 95	AK5	K	5	20	Right-handed alpha
Helix 96	AK6	K	35	46	Right-handed alpha
Helix 97	AK7	L	21	34	Right-handed alpha
Helix 98	AK8	L	66	91	Right-handed alpha
Helix 99	AK9	N	14	17	Right-handed 310
Helix 100	AL1	N	18	23	Right-handed alpha
Helix 101	AL2	N	30	38	Right-handed alpha
Helix 102	AL3	N	45	49	Right-handed 310
Helix 103	AL4	N	55	62	Right-handed alpha

There are 41 sheets in PDB entry 6KF3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1113	1120	first strand
Strand 2	A	7	15	anti-parallel
Strand 3	C	354	356	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	75	84	parallel
Strand 3	A	214	220	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	177	180	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	236	237	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	B	1006	1008	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	448	450	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	345	first strand
Strand 2	A	440	442	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	411	415	anti-parallel
Strand 3	A	381	385	anti-parallel
Strand 4	A	391	393	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	568	572	first strand
Strand 2	A	608	612	anti-parallel
Strand 3	A	616	618	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	861	first strand
Strand 2	A	867	870	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	72	first strand
Strand 2	B	100	111	anti-parallel
Strand 3	B	114	115	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	72	first strand
Strand 2	B	100	111	anti-parallel
Strand 3	B	119	127	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	84	86	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	424	426	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	441	443	parallel
Strand 3	B	480	482	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	197	first strand
Strand 2	B	202	204	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	226	227	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	489	first strand
Strand 2	B	577	585	anti-parallel
Strand 3	B	615	618	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	589	first strand
Strand 2	B	577	585	anti-parallel
Strand 3	B	641	642	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	524	first strand
Strand 2	B	527	528	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	561	first strand
Strand 2	B	566	571	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	697	first strand
Strand 2	B	754	758	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	913	914	first strand
Strand 2	B	727	728	parallel
Strand 3	B	988	989	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	739	740	first strand
Strand 2	B	891	892	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	763	764	first strand
Strand 2	B	864	865	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	815	first strand
Strand 2	B	839	842	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	868	871	first strand
Strand 2	B	850	857	anti-parallel
Strand 3	P	34	37	anti-parallel
Strand 4	P	10	11	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	882	883	first strand
Strand 2	B	995	996	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	903	904	first strand
Strand 2	B	974	975	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1059	1065	first strand
Strand 2	B	1092	1098	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	237	first strand
Strand 2	C	240	244	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	381	first strand
Strand 2	K	52	53	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	10	first strand
Strand 2	D	13	19	anti-parallel
Strand 3	D	211	226	anti-parallel
Strand 4	D	149	162	anti-parallel
Strand 5	D	188	192	anti-parallel
Strand 6	D	182	184	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	106	first strand
Strand 2	D	87	94	anti-parallel
Strand 3	D	128	139	anti-parallel
Strand 4	D	38	50	anti-parallel
Strand 5	P	44	47	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	100	first strand
Strand 2	D	119	123	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	38	first strand
Strand 2	E	44	51	anti-parallel
Strand 3	E	66	77	anti-parallel
Strand 4	E	58	59	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	38	first strand
Strand 2	E	44	51	anti-parallel
Strand 3	E	66	77	anti-parallel
Strand 4	E	2	13	anti-parallel
Strand 5	F	6	12	anti-parallel

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There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	172	first strand
Strand 2	E	141	150	anti-parallel
Strand 3	E	160	164	anti-parallel
Strand 4	E	105	109	parallel
Strand 5	E	96	100	anti-parallel
Strand 6	E	84	89	anti-parallel
Strand 7	E	141	150	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	121	first strand
Strand 2	E	126	129	anti-parallel
Strand 3	E	135	137	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	20	first strand
Strand 2	H	60	67	anti-parallel
Strand 3	H	71	80	anti-parallel
Strand 4	H	43	44	parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	8	first strand
Strand 2	L	12	17	anti-parallel
Strand 3	L	56	61	anti-parallel
Strand 4	L	38	44	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KF3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KF3