Analysis of interatomic Contacts of Structural Units in PDB entry:
6KFA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KFA entry

There is 1 chain in PDB entry 6KFA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1TYR 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 6KFA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
13 19Right-handed alpha
Helix 3
AA3
A
71 73Right-handed 310
Helix 4
AA4
A
126 137Right-handed alpha
Helix 5
AA5
A
141 145Right-handed 310
Back to top of page

There is 1 sheet (AA1) in PDB entry 6KFA.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
23 28anti-parallel
Strand 3
A
112 120anti-parallel
Strand 4
A
100 109anti-parallel
Strand 5
A
85 97anti-parallel
Strand 6
A
75 79anti-parallel
Strand 7
A
61 69anti-parallel
Strand 8
A
53 58anti-parallel
Strand 9
A
37 41anti-parallel
Strand 10
A
23 28anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il