Analysis of interatomic Contacts of Structural Units in PDB entry:
6KFF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KFF entry

There are 8 chains in PDB entry 6KFF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 16	ILE 369
B	SER 16	ILE 369
C	SER 16	ILE 369
D	SER 16	ILE 369
E	SER 16	ILE 369
F	SER 16	ILE 369
G	SER 16	ILE 369
H	SER 16	ILE 369

There are128 helices in PDB entry 6KFF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	53	Right-handed alpha
Helix 2	AA2	A	68	79	Right-handed alpha
Helix 3	AA3	A	107	134	Right-handed alpha
Helix 4	AA4	A	136	152	Right-handed alpha
Helix 5	AA5	A	155	159	Right-handed 310
Helix 6	AA6	A	160	168	Right-handed alpha
Helix 7	AA7	A	168	182	Right-handed alpha
Helix 8	AA8	A	187	212	Right-handed alpha
Helix 9	AA9	A	223	232	Right-handed alpha
Helix 10	AB1	A	269	273	Right-handed 310
Helix 11	AB2	A	276	305	Right-handed alpha
Helix 12	AB3	A	306	308	Right-handed 310
Helix 13	AB4	A	309	316	Right-handed alpha
Helix 14	AB5	A	326	335	Right-handed alpha
Helix 15	AB6	A	337	350	Right-handed alpha
Helix 16	AB7	A	351	364	Right-handed alpha
Helix 17	AB8	B	29	53	Right-handed alpha
Helix 18	AB9	B	68	79	Right-handed alpha
Helix 19	AC1	B	107	134	Right-handed alpha
Helix 20	AC2	B	136	152	Right-handed alpha
Helix 21	AC3	B	155	159	Right-handed 310
Helix 22	AC4	B	160	168	Right-handed alpha
Helix 23	AC5	B	168	182	Right-handed alpha
Helix 24	AC6	B	187	212	Right-handed alpha
Helix 25	AC7	B	223	232	Right-handed alpha
Helix 26	AC8	B	269	273	Right-handed 310
Helix 27	AC9	B	276	305	Right-handed alpha
Helix 28	AD1	B	306	308	Right-handed 310
Helix 29	AD2	B	309	316	Right-handed alpha
Helix 30	AD3	B	326	335	Right-handed alpha
Helix 31	AD4	B	337	350	Right-handed alpha
Helix 32	AD5	B	351	364	Right-handed alpha
Helix 33	AD6	C	29	53	Right-handed alpha
Helix 34	AD7	C	68	79	Right-handed alpha
Helix 35	AD8	C	107	134	Right-handed alpha
Helix 36	AD9	C	136	152	Right-handed alpha
Helix 37	AE1	C	155	159	Right-handed 310
Helix 38	AE2	C	160	168	Right-handed alpha
Helix 39	AE3	C	168	182	Right-handed alpha
Helix 40	AE4	C	187	212	Right-handed alpha
Helix 41	AE5	C	223	232	Right-handed alpha
Helix 42	AE6	C	269	273	Right-handed 310
Helix 43	AE7	C	276	305	Right-handed alpha
Helix 44	AE8	C	306	308	Right-handed 310
Helix 45	AE9	C	309	316	Right-handed alpha
Helix 46	AF1	C	326	335	Right-handed alpha
Helix 47	AF2	C	337	350	Right-handed alpha
Helix 48	AF3	C	351	364	Right-handed alpha
Helix 49	AF4	D	29	53	Right-handed alpha
Helix 50	AF5	D	68	79	Right-handed alpha
Helix 51	AF6	D	107	134	Right-handed alpha
Helix 52	AF7	D	136	152	Right-handed alpha
Helix 53	AF8	D	155	159	Right-handed 310
Helix 54	AF9	D	160	168	Right-handed alpha
Helix 55	AG1	D	168	182	Right-handed alpha
Helix 56	AG2	D	187	212	Right-handed alpha
Helix 57	AG3	D	223	232	Right-handed alpha
Helix 58	AG4	D	269	273	Right-handed 310
Helix 59	AG5	D	276	305	Right-handed alpha
Helix 60	AG6	D	306	308	Right-handed 310
Helix 61	AG7	D	309	316	Right-handed alpha
Helix 62	AG8	D	326	335	Right-handed alpha
Helix 63	AG9	D	337	350	Right-handed alpha
Helix 64	AH1	D	351	364	Right-handed alpha
Helix 65	AH2	E	29	53	Right-handed alpha
Helix 66	AH3	E	68	79	Right-handed alpha
Helix 67	AH4	E	107	134	Right-handed alpha
Helix 68	AH5	E	136	152	Right-handed alpha
Helix 69	AH6	E	155	159	Right-handed 310
Helix 70	AH7	E	160	168	Right-handed alpha
Helix 71	AH8	E	168	182	Right-handed alpha
Helix 72	AH9	E	187	212	Right-handed alpha
Helix 73	AI1	E	223	232	Right-handed alpha
Helix 74	AI2	E	269	273	Right-handed 310
Helix 75	AI3	E	276	305	Right-handed alpha
Helix 76	AI4	E	306	308	Right-handed 310
Helix 77	AI5	E	309	316	Right-handed alpha
Helix 78	AI6	E	326	335	Right-handed alpha
Helix 79	AI7	E	337	350	Right-handed alpha
Helix 80	AI8	E	351	364	Right-handed alpha
Helix 81	AI9	F	29	53	Right-handed alpha
Helix 82	AJ1	F	68	79	Right-handed alpha
Helix 83	AJ2	F	107	134	Right-handed alpha
Helix 84	AJ3	F	136	152	Right-handed alpha
Helix 85	AJ4	F	155	159	Right-handed 310
Helix 86	AJ5	F	160	168	Right-handed alpha
Helix 87	AJ6	F	168	182	Right-handed alpha
Helix 88	AJ7	F	187	212	Right-handed alpha
Helix 89	AJ8	F	223	232	Right-handed alpha
Helix 90	AJ9	F	269	273	Right-handed 310
Helix 91	AK1	F	276	305	Right-handed alpha
Helix 92	AK2	F	306	308	Right-handed 310
Helix 93	AK3	F	309	316	Right-handed alpha
Helix 94	AK4	F	326	335	Right-handed alpha
Helix 95	AK5	F	337	350	Right-handed alpha
Helix 96	AK6	F	351	364	Right-handed alpha
Helix 97	AK7	G	29	53	Right-handed alpha
Helix 98	AK8	G	68	79	Right-handed alpha
Helix 99	AK9	G	107	134	Right-handed alpha
Helix 100	AL1	G	136	152	Right-handed alpha
Helix 101	AL2	G	155	159	Right-handed 310
Helix 102	AL3	G	160	168	Right-handed alpha
Helix 103	AL4	G	168	182	Right-handed alpha
Helix 104	AL5	G	187	212	Right-handed alpha
Helix 105	AL6	G	223	232	Right-handed alpha
Helix 106	AL7	G	269	273	Right-handed 310
Helix 107	AL8	G	276	305	Right-handed alpha
Helix 108	AL9	G	306	308	Right-handed 310
Helix 109	AM1	G	309	316	Right-handed alpha
Helix 110	AM2	G	326	335	Right-handed alpha
Helix 111	AM3	G	337	350	Right-handed alpha
Helix 112	AM4	G	351	364	Right-handed alpha
Helix 113	AM5	H	29	53	Right-handed alpha
Helix 114	AM6	H	68	79	Right-handed alpha
Helix 115	AM7	H	107	134	Right-handed alpha
Helix 116	AM8	H	136	152	Right-handed alpha
Helix 117	AM9	H	155	159	Right-handed 310
Helix 118	AN1	H	160	168	Right-handed alpha
Helix 119	AN2	H	168	182	Right-handed alpha
Helix 120	AN3	H	187	212	Right-handed alpha
Helix 121	AN4	H	223	232	Right-handed alpha
Helix 122	AN5	H	269	273	Right-handed 310
Helix 123	AN6	H	276	305	Right-handed alpha
Helix 124	AN7	H	306	308	Right-handed 310
Helix 125	AN8	H	309	316	Right-handed alpha
Helix 126	AN9	H	326	335	Right-handed alpha
Helix 127	AO1	H	337	350	Right-handed alpha
Helix 128	AO2	H	351	364	Right-handed alpha

There are 8 sheets in PDB entry 6KFF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	265	267	anti-parallel
Strand 3	A	245	246	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	265	267	anti-parallel
Strand 3	B	245	246	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	265	267	anti-parallel
Strand 3	C	245	246	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	57	first strand
Strand 2	D	265	267	anti-parallel
Strand 3	D	245	246	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	57	first strand
Strand 2	E	265	267	anti-parallel
Strand 3	E	245	246	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	57	first strand
Strand 2	F	265	267	anti-parallel
Strand 3	F	245	246	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	57	first strand
Strand 2	G	265	267	anti-parallel
Strand 3	G	245	246	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	57	first strand
Strand 2	H	265	267	anti-parallel
Strand 3	H	245	246	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KFF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KFF