Analysis of interatomic Contacts of Structural Units in PDB entry:
6KFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KFR entry

There are 2 chains in PDB entry 6KFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 7ILE 455
B
 TYR 7ILE 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6KFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 26Right-handed alpha
Helix 2
AA2
A
26 37Right-handed alpha
Helix 3
AA3
A
50 57Right-handed 310
Helix 4
AA4
A
83 87Right-handed 310
Helix 5
AA5
A
94 105Right-handed alpha
Helix 6
AA6
A
118 131Right-handed alpha
Helix 7
AA7
A
140 157Right-handed alpha
Helix 8
AA8
A
172 175Right-handed 310
Helix 9
AA9
A
196 201Right-handed alpha
Helix 10
AB1
A
210 221Right-handed alpha
Helix 11
AB2
A
241 256Right-handed alpha
Helix 12
AB3
A
273 280Right-handed alpha
Helix 13
AB4
A
290 294Right-handed 310
Helix 14
AB5
A
304 309Right-handed alpha
Helix 15
AB6
A
326 330Right-handed 310
Helix 16
AB7
A
340 357Right-handed alpha
Helix 17
AB8
A
358 382Right-handed alpha
Helix 18
AB9
A
403 414Right-handed alpha
Helix 19
AC1
A
431 452Right-handed alpha
Helix 20
AC2
B
8 26Right-handed alpha
Helix 21
AC3
B
26 36Right-handed alpha
Helix 22
AC4
B
42 47Right-handed 310
Helix 23
AC5
B
52 57Right-handed 310
Helix 24
AC6
B
82 87Right-handed 310
Helix 25
AC7
B
94 107Right-handed alpha
Helix 26
AC8
B
118 131Right-handed alpha
Helix 27
AC9
B
140 157Right-handed alpha
Helix 28
AD1
B
172 175Right-handed 310
Helix 29
AD2
B
196 201Right-handed 310
Helix 30
AD3
B
212 221Right-handed alpha
Helix 31
AD4
B
241 255Right-handed alpha
Helix 32
AD5
B
273 280Right-handed alpha
Helix 33
AD6
B
291 294Right-handed 310
Helix 34
AD7
B
304 309Right-handed alpha
Helix 35
AD8
B
325 330Right-handed 310
Helix 36
AD9
B
340 357Right-handed alpha
Helix 37
AE1
B
359 383Right-handed alpha
Helix 38
AE2
B
403 414Right-handed alpha
Helix 39
AE3
B
431 452Right-handed alpha
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There are 8 sheets in PDB entry 6KFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
69 72anti-parallel
Strand 3
A
77 80anti-parallel
Strand 4
A
416 417parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
299 303anti-parallel
Strand 3
A
285 288anti-parallel
Strand 4
A
258 263parallel
Strand 5
A
224 229parallel
Strand 6
A
160 164parallel
Strand 7
A
203 206parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
189 190anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 392first strand
Strand 2
A
395 400anti-parallel
Strand 3
A
424 425anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
69 72anti-parallel
Strand 3
B
77 80anti-parallel
Strand 4
B
416 417parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 138first strand
Strand 2
B
299 303anti-parallel
Strand 3
B
285 289anti-parallel
Strand 4
B
258 262parallel
Strand 5
B
224 229parallel
Strand 6
B
160 164parallel
Strand 7
B
203 206parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
189 190anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 392first strand
Strand 2
B
395 400anti-parallel
Strand 3
B
424 425anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il