Analysis of interatomic Contacts of Structural Units in PDB entry:
6KFU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KFU entry

There is 1 chain in PDB entry 6KFU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5ILE 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6KFU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 24Right-handed alpha
Helix 2
AA2
A
26 30Right-handed 310
Helix 3
AA3
A
35 40Right-handed 310
Helix 4
AA4
A
42 57Right-handed alpha
Helix 5
AA5
A
62 68Right-handed 310
Helix 6
AA6
A
72 81Right-handed alpha
Helix 7
AA7
A
101 117Right-handed alpha
Helix 8
AA8
A
117 128Right-handed alpha
Helix 9
AA9
A
133 138Right-handed 310
Helix 10
AB1
A
144 148Right-handed 310
Helix 11
AB2
A
173 178Right-handed 310
Helix 12
AB3
A
185 198Right-handed alpha
Helix 13
AB4
A
209 222Right-handed alpha
Helix 14
AB5
A
231 248Right-handed alpha
Helix 15
AB6
A
263 266Right-handed 310
Helix 16
AB7
A
287 292Right-handed 310
Helix 17
AB8
A
301 312Right-handed alpha
Helix 18
AB9
A
332 346Right-handed alpha
Helix 19
AC1
A
364 370Right-handed alpha
Helix 20
AC2
A
382 385Right-handed 310
Helix 21
AC3
A
395 404Right-handed alpha
Helix 22
AC4
A
417 421Right-handed 310
Helix 23
AC5
A
431 448Right-handed alpha
Helix 24
AC6
A
449 473Right-handed alpha
Helix 25
AC7
A
494 505Right-handed alpha
Helix 26
AC8
A
522 542Right-handed alpha
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There are 4 sheets in PDB entry 6KFU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 157first strand
Strand 2
A
160 163anti-parallel
Strand 3
A
168 171anti-parallel
Strand 4
A
507 508parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 229first strand
Strand 2
A
390 394anti-parallel
Strand 3
A
376 380anti-parallel
Strand 4
A
349 353parallel
Strand 5
A
315 320parallel
Strand 6
A
251 255parallel
Strand 7
A
294 297parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
280 281anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 483first strand
Strand 2
A
486 491anti-parallel
Strand 3
A
515 516anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il