Analysis of interatomic Contacts of Structural Units in PDB entry:
6KFW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KFW entry

There is 1 chain in PDB entry 6KFW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2ARG 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6KFW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
17 28Right-handed alpha
Helix 3
AA3
A
46 56Right-handed alpha
Helix 4
AA4
A
62 66Right-handed 310
Helix 5
AA5
A
67 78Right-handed alpha
Helix 6
AA6
A
79 82Right-handed 310
Helix 7
AA7
A
84 88Right-handed 310
Helix 8
AA8
A
91 98Right-handed alpha
Helix 9
AA9
A
101 104Right-handed 310
Helix 10
AB1
A
105 110Right-handed alpha
Helix 11
AB2
A
112 125Right-handed alpha
Helix 12
AB3
A
135 139Right-handed alpha
Helix 13
AB4
A
141 153Right-handed alpha
Helix 14
AB5
A
155 157Right-handed 310
Helix 15
AB6
A
158 170Right-handed alpha
Helix 16
AB7
A
177 201Right-handed alpha
Helix 17
AB8
A
206 217Right-handed alpha
Helix 18
AB9
A
221 254Right-handed alpha
Helix 19
AC1
A
254 264Right-handed alpha
Helix 20
AC2
A
267 280Right-handed alpha
Helix 21
AC3
A
310 315Right-handed alpha
Helix 22
AC4
A
341 345Right-handed 310
Helix 23
AC5
A
348 367Right-handed alpha
Helix 24
AC6
A
375 379Right-handed 310
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There are 4 sheets in PDB entry 6KFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
41 44anti-parallel
Strand 3
A
306 309parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
289 290anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
371 372anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
299 301anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il