Analysis of interatomic Contacts of Structural Units in PDB entry:
6KGA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KGA entry

There are 3 chains in PDB entry 6KGA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	HIS 388
B	GLY 2	HIS 388
C	GLY 2	HIS 388

There are 38 helices in PDB entry 6KGA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	21	Right-handed alpha
Helix 2	AA2	A	31	46	Right-handed alpha
Helix 3	AA3	A	47	59	Right-handed alpha
Helix 4	AA4	A	77	92	Right-handed alpha
Helix 5	AA5	A	115	127	Right-handed alpha
Helix 6	AA6	A	138	154	Right-handed alpha
Helix 7	AA7	A	236	238	Right-handed 310
Helix 8	AA8	A	251	260	Right-handed alpha
Helix 9	AA9	A	261	269	Right-handed alpha
Helix 10	AB1	A	294	302	Right-handed alpha
Helix 11	AB2	A	303	308	Right-handed alpha
Helix 12	AB3	B	3	20	Right-handed alpha
Helix 13	AB4	B	21	23	Right-handed 310
Helix 14	AB5	B	31	46	Right-handed alpha
Helix 15	AB6	B	47	58	Right-handed alpha
Helix 16	AB7	B	77	93	Right-handed alpha
Helix 17	AB8	B	115	126	Right-handed alpha
Helix 18	AB9	B	138	154	Right-handed alpha
Helix 19	AC1	B	236	238	Right-handed 310
Helix 20	AC2	B	249	251	Right-handed 310
Helix 21	AC3	B	252	260	Right-handed alpha
Helix 22	AC4	B	261	269	Right-handed alpha
Helix 23	AC5	B	294	301	Right-handed alpha
Helix 24	AC6	B	303	308	Right-handed alpha
Helix 25	AC7	C	3	20	Right-handed alpha
Helix 26	AC8	C	21	23	Right-handed 310
Helix 27	AC9	C	31	46	Right-handed alpha
Helix 28	AD1	C	47	58	Right-handed alpha
Helix 29	AD2	C	77	92	Right-handed alpha
Helix 30	AD3	C	115	126	Right-handed alpha
Helix 31	AD4	C	138	154	Right-handed alpha
Helix 32	AD5	C	190	194	Right-handed 310
Helix 33	AD6	C	236	238	Right-handed 310
Helix 34	AD7	C	249	251	Right-handed 310
Helix 35	AD8	C	252	260	Right-handed alpha
Helix 36	AD9	C	261	269	Right-handed alpha
Helix 37	AE1	C	294	302	Right-handed alpha
Helix 38	AE2	C	303	308	Right-handed alpha

There are 9 sheets in PDB entry 6KGA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	C	376	383	anti-parallel
Strand 3	C	365	371	anti-parallel
Strand 4	A	240	247	anti-parallel
Strand 5	A	228	234	anti-parallel
Strand 6	A	207	223	anti-parallel
Strand 7	A	195	199	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	C	376	383	anti-parallel
Strand 3	C	365	371	anti-parallel
Strand 4	A	240	247	anti-parallel
Strand 5	A	228	234	anti-parallel
Strand 6	A	207	223	anti-parallel
Strand 7	A	275	284	anti-parallel
Strand 8	C	358	360	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	133	first strand
Strand 2	A	99	109	parallel
Strand 3	A	173	184	anti-parallel
Strand 4	A	339	351	anti-parallel
Strand 5	A	323	335	anti-parallel
Strand 6	A	286	293	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	360	first strand
Strand 2	B	275	284	parallel
Strand 3	B	207	223	anti-parallel
Strand 4	B	228	234	anti-parallel
Strand 5	B	240	247	anti-parallel
Strand 6	A	365	371	anti-parallel
Strand 7	A	376	383	anti-parallel
Strand 8	B	28	30	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	360	first strand
Strand 2	B	275	284	parallel
Strand 3	B	207	223	anti-parallel
Strand 4	B	195	199	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	132	first strand
Strand 2	B	99	108	parallel
Strand 3	B	173	184	anti-parallel
Strand 4	B	339	351	anti-parallel
Strand 5	B	323	335	anti-parallel
Strand 6	B	286	293	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	C	275	284	parallel
Strand 3	C	207	223	anti-parallel
Strand 4	C	228	234	anti-parallel
Strand 5	C	240	247	anti-parallel
Strand 6	B	365	371	anti-parallel
Strand 7	B	376	383	anti-parallel
Strand 8	C	28	30	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	C	275	284	parallel
Strand 3	C	207	223	anti-parallel
Strand 4	C	195	199	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	132	first strand
Strand 2	C	99	108	parallel
Strand 3	C	173	184	anti-parallel
Strand 4	C	339	350	anti-parallel
Strand 5	C	324	335	anti-parallel
Strand 6	C	286	293	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KGA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KGA