Analysis of interatomic Contacts of Structural Units in PDB entry:
6KGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KGJ entry

There are 2 chains in PDB entry 6KGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 1SER 202
A
 GLN 1SER 202
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6KGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
5 9Right-handed 310
Helix 2
AA2
B
17 21Right-handed 310
Helix 3
AA3
B
27 41Right-handed alpha
Helix 4
AA4
B
46 48Right-handed 310
Helix 5
AA5
B
108 116Right-handed alpha
Helix 6
AA6
B
123 127Right-handed 310
Helix 7
AA7
B
135 142Right-handed alpha
Helix 8
AA8
B
146 150Right-handed 310
Helix 9
AA9
B
175 180Right-handed alpha
Helix 10
AB1
B
193 201Right-handed alpha
Helix 11
AB2
A
17 21Right-handed 310
Helix 12
AB3
A
27 41Right-handed alpha
Helix 13
AB4
A
46 48Right-handed 310
Helix 14
AB5
A
108 117Right-handed alpha
Helix 15
AB6
A
118 122Right-handed 310
Helix 16
AB7
A
123 127Right-handed 310
Helix 17
AB8
A
135 142Right-handed alpha
Helix 18
AB9
A
146 150Right-handed 310
Helix 19
AC1
A
175 180Right-handed alpha
Helix 20
AC2
A
193 201Right-handed alpha
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There are 4 sheets in PDB entry 6KGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
93 96anti-parallel
Strand 3
B
81 87anti-parallel
Strand 4
B
50 56anti-parallel
Strand 5
B
129 134anti-parallel
Strand 6
B
189 192anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
76 78anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
93 96anti-parallel
Strand 3
A
81 87anti-parallel
Strand 4
A
50 56anti-parallel
Strand 5
A
129 134anti-parallel
Strand 6
A
189 192anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
76 78anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il