Analysis of interatomic Contacts of Structural Units in PDB entry:
6KGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KGV entry

There is 1 chain in PDB entry 6KGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 129THR 679
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6KGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
251 256Right-handed alpha
Helix 2
AA2
A
267 272Right-handed alpha
Helix 3
AA3
A
272 278Right-handed alpha
Helix 4
AA4
A
315 334Right-handed alpha
Helix 5
AA5
A
364 368Right-handed 310
Helix 6
AA6
A
375 380Right-handed alpha
Helix 7
AA7
A
384 387Right-handed 310
Helix 8
AA8
A
388 399Right-handed alpha
Helix 9
AA9
A
433 440Right-handed alpha
Helix 10
AB1
A
442 465Right-handed alpha
Helix 11
AB2
A
485 489Right-handed 310
Helix 12
AB3
A
492 500Right-handed 310
Helix 13
AB4
A
506 519Right-handed alpha
Helix 14
AB5
A
552 564Right-handed alpha
Helix 15
AB6
A
565 568Right-handed 310
Helix 16
AB7
A
579 583Right-handed 310
Helix 17
AB8
A
647 662Right-handed alpha
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There are 6 sheets in PDB entry 6KGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
281 282anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 244first strand
Strand 2
A
145 153anti-parallel
Strand 3
A
138 139anti-parallel
Strand 4
A
309 312parallel
Strand 5
A
529 533anti-parallel
Strand 6
A
539 541anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
264 266anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 355first strand
Strand 2
A
338 344anti-parallel
Strand 3
A
626 633anti-parallel
Strand 4
A
606 619anti-parallel
Strand 5
A
590 599anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 416first strand
Strand 2
A
419 422anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 523first strand
Strand 2
A
548 549anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il