Analysis of interatomic Contacts of Structural Units in PDB entry:
6KHE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KHE entry

There is 1 chain in PDB entry 6KHE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 144GLU 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6KHE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
198 219Right-handed alpha
Helix 2
AA2
A
249 256Right-handed alpha
Helix 3
AA3
A
263 283Right-handed alpha
Helix 4
AA4
A
292 294Right-handed 310
Helix 5
AA5
A
327 331Right-handed 310
Helix 6
AA6
A
344 348Right-handed 310
Helix 7
AA7
A
349 354Right-handed alpha
Helix 8
AA8
A
360 377Right-handed alpha
Helix 9
AA9
A
385 398Right-handed alpha
Helix 10
AB1
A
401 408Right-handed alpha
Helix 11
AB2
A
410 412Right-handed 310
Helix 12
AB3
A
425 435Right-handed alpha
Helix 13
AB4
A
437 442Right-handed 310
Helix 14
AB5
A
446 460Right-handed alpha
Helix 15
AB6
A
469 474Right-handed alpha
Helix 16
AB7
A
476 480Right-handed 310
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There are 5 sheets in PDB entry 6KHE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
163 171anti-parallel
Strand 3
A
175 182anti-parallel
Strand 4
A
189 195anti-parallel
Strand 5
A
238 244anti-parallel
Strand 6
A
229 235anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 287first strand
Strand 2
A
332 333anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
323 325anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 308first strand
Strand 2
A
313 318anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
A
418 419anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il