Analysis of interatomic Contacts of Structural Units in PDB entry:
6KHK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KHK entry

There are 2 chains in PDB entry 6KHK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 311
B
 ALA 2ASN 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6KHK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 44Right-handed 310
Helix 2
AA2
A
45 55Right-handed alpha
Helix 3
AA3
A
67 75Right-handed alpha
Helix 4
AA4
A
83 98Right-handed alpha
Helix 5
AA5
A
114 125Right-handed alpha
Helix 6
AA6
A
143 148Right-handed alpha
Helix 7
AA7
A
151 162Right-handed alpha
Helix 8
AA8
A
168 176Right-handed alpha
Helix 9
AA9
A
184 188Right-handed 310
Helix 10
AB1
A
190 194Right-handed 310
Helix 11
AB2
A
196 206Right-handed alpha
Helix 12
AB3
A
216 232Right-handed alpha
Helix 13
AB4
A
232 239Right-handed alpha
Helix 14
AB5
A
252 256Right-handed 310
Helix 15
AB6
A
258 271Right-handed alpha
Helix 16
AB7
A
293 311Right-handed alpha
Helix 17
AB8
B
41 44Right-handed 310
Helix 18
AB9
B
45 55Right-handed alpha
Helix 19
AC1
B
67 75Right-handed alpha
Helix 20
AC2
B
83 98Right-handed alpha
Helix 21
AC3
B
114 125Right-handed alpha
Helix 22
AC4
B
143 148Right-handed alpha
Helix 23
AC5
B
151 162Right-handed alpha
Helix 24
AC6
B
168 176Right-handed alpha
Helix 25
AC7
B
184 188Right-handed 310
Helix 26
AC8
B
190 194Right-handed 310
Helix 27
AC9
B
196 206Right-handed alpha
Helix 28
AD1
B
216 232Right-handed alpha
Helix 29
AD2
B
232 239Right-handed alpha
Helix 30
AD3
B
252 256Right-handed 310
Helix 31
AD4
B
258 271Right-handed alpha
Helix 32
AD5
B
293 310Right-handed alpha
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There are 2 sheets in PDB entry 6KHK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 9first strand
Strand 2
A
16 22anti-parallel
Strand 3
A
57 63anti-parallel
Strand 4
A
30 35parallel
Strand 5
A
108 113parallel
Strand 6
A
133 137parallel
Strand 7
A
244 249parallel
Strand 8
A
275 280parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 9first strand
Strand 2
B
16 22anti-parallel
Strand 3
B
57 63anti-parallel
Strand 4
B
30 35parallel
Strand 5
B
108 113parallel
Strand 6
B
133 137parallel
Strand 7
B
244 249parallel
Strand 8
B
275 280parallel
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