Analysis of interatomic Contacts of Structural Units in PDB entry:
6KHO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KHO entry

There are 2 chains in PDB entry 6KHO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 21ASN 514
B
 THR 21ASN 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 6KHO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 48Right-handed alpha
Helix 2
AA2
A
49 51Right-handed 310
Helix 3
AA3
A
60 66Right-handed alpha
Helix 4
AA4
A
76 88Right-handed alpha
Helix 5
AA5
A
89 92Right-handed 310
Helix 6
AA6
A
109 123Right-handed alpha
Helix 7
AA7
A
132 150Right-handed alpha
Helix 8
AA8
A
153 157Right-handed 310
Helix 9
AA9
A
174 195Right-handed alpha
Helix 10
AB1
A
199 203Right-handed 310
Helix 11
AB2
A
214 224Right-handed alpha
Helix 12
AB3
A
227 229Right-handed 310
Helix 13
AB4
A
237 241Right-handed 310
Helix 14
AB5
A
245 259Right-handed alpha
Helix 15
AB6
A
280 290Right-handed alpha
Helix 16
AB7
A
301 308Right-handed 310
Helix 17
AB8
A
311 316Right-handed 310
Helix 18
AB9
A
317 321Right-handed 310
Helix 19
AC1
A
327 332Right-handed alpha
Helix 20
AC2
A
345 354Right-handed alpha
Helix 21
AC3
A
357 361Right-handed 310
Helix 22
AC4
A
362 367Right-handed alpha
Helix 23
AC5
A
372 377Right-handed 310
Helix 24
AC6
A
385 421Right-handed alpha
Helix 25
AC7
A
450 469Right-handed alpha
Helix 26
AC8
A
494 514Right-handed alpha
Helix 27
AC9
B
26 48Right-handed alpha
Helix 28
AD1
B
49 51Right-handed 310
Helix 29
AD2
B
61 65Right-handed 310
Helix 30
AD3
B
76 88Right-handed alpha
Helix 31
AD4
B
89 92Right-handed 310
Helix 32
AD5
B
109 123Right-handed alpha
Helix 33
AD6
B
132 150Right-handed alpha
Helix 34
AD7
B
153 157Right-handed 310
Helix 35
AD8
B
174 194Right-handed alpha
Helix 36
AD9
B
201 203Right-handed 310
Helix 37
AE1
B
214 224Right-handed alpha
Helix 38
AE2
B
227 229Right-handed 310
Helix 39
AE3
B
237 241Right-handed 310
Helix 40
AE4
B
245 259Right-handed alpha
Helix 41
AE5
B
280 290Right-handed alpha
Helix 42
AE6
B
301 307Right-handed 310
Helix 43
AE7
B
308 313Right-handed alpha
Helix 44
AE8
B
314 316Right-handed 310
Helix 45
AE9
B
317 321Right-handed 310
Helix 46
AF1
B
327 332Right-handed alpha
Helix 47
AF2
B
345 349Right-handed 310
Helix 48
AF3
B
385 421Right-handed alpha
Helix 49
AF4
B
445 449Right-handed 310
Helix 50
AF5
B
450 468Right-handed alpha
Helix 51
AF6
B
494 513Right-handed alpha
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There are 4 sheets in PDB entry 6KHO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 172first strand
Strand 2
A
339 343anti-parallel
Strand 3
A
323 326anti-parallel
Strand 4
A
294 298parallel
Strand 5
A
262 269parallel
Strand 6
A
205 210parallel
Strand 7
A
231 234parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 427first strand
Strand 2
A
435 440anti-parallel
Strand 3
A
481 487anti-parallel
Strand 4
A
474 478anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 172first strand
Strand 2
B
339 343anti-parallel
Strand 3
B
323 326anti-parallel
Strand 4
B
294 298parallel
Strand 5
B
262 269parallel
Strand 6
B
205 210parallel
Strand 7
B
231 234parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
425 427first strand
Strand 2
B
435 440anti-parallel
Strand 3
B
481 487anti-parallel
Strand 4
B
475 478anti-parallel
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