Analysis of interatomic Contacts of Structural Units in PDB entry:
6KI9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KI9 entry

There are 3 chains in PDB entry 6KI9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 440
B
 MET 1HIS 445
C
 MET 1HIS 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 6KI9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 44Right-handed alpha
Helix 2
AA2
A
66 78Right-handed alpha
Helix 3
AA3
A
102 106Right-handed 310
Helix 4
AA4
A
119 147Right-handed alpha
Helix 5
AA5
A
170 181Right-handed alpha
Helix 6
AA6
A
182 186Right-handed 310
Helix 7
AA7
A
188 195Right-handed alpha
Helix 8
AA8
A
195 210Right-handed alpha
Helix 9
AA9
A
210 220Right-handed alpha
Helix 10
AB1
A
220 230Right-handed alpha
Helix 11
AB2
A
262 279Right-handed alpha
Helix 12
AB3
A
301 307Right-handed 310
Helix 13
AB4
A
308 316Right-handed alpha
Helix 14
AB5
A
319 332Right-handed alpha
Helix 15
AB6
A
338 352Right-handed alpha
Helix 16
AB7
A
352 357Right-handed alpha
Helix 17
AB8
A
369 385Right-handed alpha
Helix 18
AB9
A
393 414Right-handed alpha
Helix 19
AC1
A
425 437Right-handed alpha
Helix 20
AC2
B
32 44Right-handed alpha
Helix 21
AC3
B
66 78Right-handed alpha
Helix 22
AC4
B
102 106Right-handed 310
Helix 23
AC5
B
119 147Right-handed alpha
Helix 24
AC6
B
169 181Right-handed alpha
Helix 25
AC7
B
182 186Right-handed 310
Helix 26
AC8
B
188 195Right-handed alpha
Helix 27
AC9
B
195 210Right-handed alpha
Helix 28
AD1
B
210 220Right-handed alpha
Helix 29
AD2
B
220 230Right-handed alpha
Helix 30
AD3
B
262 279Right-handed alpha
Helix 31
AD4
B
301 307Right-handed 310
Helix 32
AD5
B
308 316Right-handed alpha
Helix 33
AD6
B
319 332Right-handed alpha
Helix 34
AD7
B
338 352Right-handed alpha
Helix 35
AD8
B
352 357Right-handed alpha
Helix 36
AD9
B
369 386Right-handed alpha
Helix 37
AE1
B
393 414Right-handed alpha
Helix 38
AE2
B
425 437Right-handed alpha
Helix 39
AE3
C
32 44Right-handed alpha
Helix 40
AE4
C
170 181Right-handed alpha
Helix 41
AE5
C
182 186Right-handed 310
Helix 42
AE6
C
188 195Right-handed alpha
Helix 43
AE7
C
195 210Right-handed alpha
Helix 44
AE8
C
210 220Right-handed alpha
Helix 45
AE9
C
220 230Right-handed alpha
Helix 46
AF1
C
262 277Right-handed alpha
Helix 47
AF2
C
301 307Right-handed 310
Helix 48
AF3
C
308 316Right-handed alpha
Helix 49
AF4
C
319 332Right-handed alpha
Helix 50
AF5
C
338 352Right-handed alpha
Helix 51
AF6
C
352 357Right-handed alpha
Helix 52
AF7
C
369 386Right-handed alpha
Helix 53
AF8
C
393 416Right-handed alpha
Helix 54
AF9
C
425 437Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6KI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 85first strand
Strand 2
A
47 52parallel
Strand 3
A
21 25parallel
Strand 4
A
155 159parallel
Strand 5
A
234 240parallel
Strand 6
A
283 287parallel
Strand 7
A
421 423parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 248first strand
Strand 2
A
251 255anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 85first strand
Strand 2
B
47 52parallel
Strand 3
B
21 25parallel
Strand 4
B
155 159parallel
Strand 5
B
234 240parallel
Strand 6
B
283 287parallel
Strand 7
B
421 423parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 248first strand
Strand 2
B
251 255anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 25first strand
Strand 2
C
156 159parallel
Strand 3
C
235 240parallel
Strand 4
C
284 287parallel
Strand 5
C
421 423parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 248first strand
Strand 2
C
251 255anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il