Analysis of interatomic Contacts of Structural Units in PDB entry:
6KID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KID entry

There is 1 chain in PDB entry 6KID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7PHE 1061
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6KID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 27Right-handed alpha
Helix 2
AA2
A
35 39Right-handed 310
Helix 3
AA3
A
60 81Right-handed alpha
Helix 4
AA4
A
94 112Right-handed alpha
Helix 5
AA5
A
157 162Right-handed alpha
Helix 6
AA6
A
167 172Right-handed alpha
Helix 7
AA7
A
173 176Right-handed 310
Helix 8
AA8
A
177 182Right-handed alpha
Helix 9
AA9
A
184 194Right-handed alpha
Helix 10
AB1
A
200 204Right-handed 310
Helix 11
AB2
A
211 228Right-handed alpha
Helix 12
AB3
A
249 253Right-handed 310
Helix 13
AB4
A
295 299Right-handed 310
Helix 14
AB5
A
328 337Right-handed alpha
Helix 15
AB6
A
355 357Right-handed 310
Helix 16
AB7
A
396 409Right-handed alpha
Helix 17
AB8
A
411 416Right-handed alpha
Helix 18
AB9
A
440 447Right-handed alpha
Helix 19
AC1
A
456 469Right-handed alpha
Helix 20
AC2
A
469 474Right-handed alpha
Helix 21
AC3
A
486 501Right-handed alpha
Helix 22
AC4
A
536 548Right-handed alpha
Helix 23
AC5
A
556 568Right-handed alpha
Helix 24
AC6
A
600 605Right-handed alpha
Helix 25
AC7
A
606 611Right-handed alpha
Helix 26
AC8
A
626 630Right-handed 310
Helix 27
AC9
A
631 640Right-handed alpha
Helix 28
AD1
A
651 666Right-handed alpha
Helix 29
AD2
A
680 693Right-handed alpha
Helix 30
AD3
A
696 700Right-handed 310
Helix 31
AD4
A
726 734Right-handed alpha
Helix 32
AD5
A
735 745Right-handed alpha
Helix 33
AD6
A
756 778Right-handed alpha
Helix 34
AD7
A
779 784Right-handed 310
Helix 35
AD8
A
791 814Right-handed alpha
Helix 36
AD9
A
816 825Right-handed alpha
Helix 37
AE1
A
825 839Right-handed alpha
Helix 38
AE2
A
847 860Right-handed alpha
Helix 39
AE3
A
863 874Right-handed alpha
Helix 40
AE4
A
879 883Right-handed 310
Helix 41
AE5
A
893 910Right-handed alpha
Helix 42
AE6
A
946 956Right-handed alpha
Helix 43
AE7
A
956 961Right-handed alpha
Helix 44
AE8
A
981 985Right-handed 310
Helix 45
AE9
A
988 998Right-handed alpha
Helix 46
AF1
A
1005 1009Right-handed 310
Helix 47
AF2
A
1023 1031Right-handed alpha
Helix 48
AF3
A
1045 1050Right-handed alpha
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There are 9 sheets in PDB entry 6KID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
83 85parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
231 241anti-parallel
Strand 3
A
523 532anti-parallel
Strand 4
A
571 572anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 293first strand
Strand 2
A
261 271anti-parallel
Strand 3
A
361 363anti-parallel
Strand 4
A
372 375anti-parallel
Strand 5
A
304 306parallel
Strand 6
A
389 390anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 293first strand
Strand 2
A
261 271anti-parallel
Strand 3
A
504 510anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
312 315anti-parallel
Strand 3
A
350 353anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 575first strand
Strand 2
A
590 591anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
672 673first strand
Strand 2
A
705 706parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
710 712first strand
Strand 2
A
753 755parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
936 939first strand
Strand 2
A
1036 1039parallel
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