Analysis of interatomic Contacts of Structural Units in PDB entry:
6KII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KII entry

There is 1 chain in PDB entry 6KII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 6THR 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6KII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 30Right-handed alpha
Helix 2
AA2
A
41 46Right-handed 310
Helix 3
AA3
A
56 77Right-handed alpha
Helix 4
AA4
A
87 100Right-handed alpha
Helix 5
AA5
A
111 126Right-handed alpha
Helix 6
AA6
A
127 129Right-handed 310
Helix 7
AA7
A
142 146Right-handed 310
Helix 8
AA8
A
149 153Right-handed 310
Helix 9
AA9
A
156 168Right-handed alpha
Helix 10
AB1
A
193 198Right-handed alpha
Helix 11
AB2
A
215 228Right-handed alpha
Helix 12
AB3
A
232 234Right-handed 310
Helix 13
AB4
A
235 240Right-handed alpha
Helix 14
AB5
A
252 258Right-handed alpha
Helix 15
AB6
A
262 277Right-handed alpha
Helix 16
AB7
A
280 304Right-handed alpha
Helix 17
AB8
A
305 309Right-handed 310
Helix 18
AB9
A
323 332Right-handed alpha
Helix 19
AC1
A
337 351Right-handed alpha
Helix 20
AC2
A
354 368Right-handed alpha
Helix 21
AC3
A
372 384Right-handed alpha
Helix 22
AC4
A
388 401Right-handed alpha
Helix 23
AC5
A
413 422Right-handed alpha
Helix 24
AC6
A
425 432Right-handed alpha
Helix 25
AC7
A
433 436Right-handed 310
Helix 26
AC8
A
441 449Right-handed 310
Helix 27
AC9
A
450 458Right-handed alpha
Helix 28
AD1
A
471 489Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6KII.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
33 40parallel
Strand 3
A
7 12parallel
Strand 4
A
103 107parallel
Strand 5
A
131 135parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il