Analysis of interatomic Contacts of Structural Units in PDB entry:
6KIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KIP entry

There are 2 chains in PDB entry 6KIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1212ALA 1507
B
 LYS 807ARG 1114
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6KIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1220 1230Right-handed alpha
Helix 2
AA2
A
1238 1247Right-handed alpha
Helix 3
AA3
A
1258 1269Right-handed 310
Helix 4
AA4
A
1277 1281Right-handed 310
Helix 5
AA5
A
1317 1319Right-handed 310
Helix 6
AA6
A
1320 1331Right-handed alpha
Helix 7
AA7
A
1413 1430Right-handed alpha
Helix 8
AA8
A
1445 1464Right-handed alpha
Helix 9
AA9
A
1467 1477Right-handed alpha
Helix 10
AB1
A
1485 1501Right-handed alpha
Helix 11
AB2
A
1502 1507Right-handed 310
Helix 12
AB3
B
812 831Right-handed alpha
Helix 13
AB4
B
834 838Right-handed 310
Helix 14
AB5
B
839 850Right-handed alpha
Helix 15
AB6
B
854 865Right-handed alpha
Helix 16
AB7
B
867 873Right-handed alpha
Helix 17
AB8
B
875 883Right-handed alpha
Helix 18
AB9
B
887 905Right-handed alpha
Helix 19
AC1
B
953 960Right-handed alpha
Helix 20
AC2
B
960 965Right-handed alpha
Helix 21
AC3
B
966 969Right-handed 310
Helix 22
AC4
B
970 977Right-handed alpha
Helix 23
AC5
B
980 985Right-handed alpha
Helix 24
AC6
B
988 994Right-handed alpha
Helix 25
AC7
B
1000 1017Right-handed alpha
Helix 26
AC8
B
1020 1030Right-handed alpha
Helix 27
AC9
B
1037 1041Right-handed 310
Helix 28
AD1
B
1042 1053Right-handed alpha
Helix 29
AD2
B
1055 1060Right-handed alpha
Helix 30
AD3
B
1061 1063Right-handed 310
Helix 31
AD4
B
1068 1075Right-handed alpha
Helix 32
AD5
B
1079 1087Right-handed alpha
Helix 33
AD6
B
1093 1112Right-handed alpha
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There are 3 sheets in PDB entry 6KIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1216 1217first strand
Strand 2
A
1465 1466anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1298 1301first strand
Strand 2
A
1310 1314anti-parallel
Strand 3
A
1436 1440parallel
Strand 4
A
1335 1338parallel
Strand 5
A
1393 1401parallel
Strand 6
A
1378 1387anti-parallel
Strand 7
A
1365 1375anti-parallel
Strand 8
A
1360 1362anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1343 1344first strand
Strand 2
A
1347 1348anti-parallel
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