Analysis of interatomic Contacts of Structural Units in PDB entry:
6KIV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KIV entry

There are 15 chains in PDB entry 6KIV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	ARG 134
B	LYS 16	GLY 101
C	ARG 11	SER 122
D	ARG 27	SER 120
E	PRO 38	ARG 134
F	VAL 21	GLY 101
G	LYS 13	PRO 117
H	LYS 28	LYS 122
I	T 2	A 146
J	T 2	A 146
K	ALA 3764	ASN 3969
N	ASN 2	VAL 380
O	MET 1	CYS 76
T	VAL 287	GLY 504
R	PRO 33	SER 332

There are 40 helices in PDB entry 6KIV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	56	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	86	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	32	42	Right-handed alpha
Helix 6	AA6	B	49	76	Right-handed alpha
Helix 7	AA7	B	82	94	Right-handed alpha
Helix 8	AA8	C	16	22	Right-handed alpha
Helix 9	AA9	C	27	36	Right-handed alpha
Helix 10	AB1	C	46	73	Right-handed alpha
Helix 11	AB2	C	79	90	Right-handed alpha
Helix 12	AB3	C	91	97	Right-handed alpha
Helix 13	AB4	D	34	46	Right-handed alpha
Helix 14	AB5	D	53	81	Right-handed alpha
Helix 15	AB6	D	87	99	Right-handed alpha
Helix 16	AB7	D	101	120	Right-handed alpha
Helix 17	AB8	E	44	56	Right-handed alpha
Helix 18	AB9	E	63	76	Right-handed alpha
Helix 19	AC1	E	86	114	Right-handed alpha
Helix 20	AC2	E	120	132	Right-handed alpha
Helix 21	AC3	F	24	29	Right-handed 310
Helix 22	AC4	F	30	42	Right-handed alpha
Helix 23	AC5	F	49	76	Right-handed alpha
Helix 24	AC6	F	82	94	Right-handed alpha
Helix 25	AC7	G	16	22	Right-handed alpha
Helix 26	AC8	G	27	37	Right-handed alpha
Helix 27	AC9	G	46	73	Right-handed alpha
Helix 28	AD1	G	79	89	Right-handed alpha
Helix 29	AD2	G	92	97	Right-handed alpha
Helix 30	AD3	H	34	46	Right-handed alpha
Helix 31	AD4	H	52	81	Right-handed alpha
Helix 32	AD5	H	87	99	Right-handed alpha
Helix 33	AD6	H	100	121	Right-handed alpha
Helix 34	AD7	K	3815	3830	Right-handed alpha
Helix 35	AD8	K	3866	3878	Right-handed alpha
Helix 36	AD9	N	227	234	Right-handed alpha
Helix 37	AE1	O	22	34	Right-handed alpha
Helix 38	AE2	O	37	41	Right-handed 310
Helix 39	AE3	O	55	59	Right-handed 310
Helix 40	AE4	T	501	503	Right-handed 310

There are 35 sheets in PDB entry 6KIV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3831	3835	first strand
Strand 2	K	3841	3845	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3884	3886	first strand
Strand 2	K	3892	3894	anti-parallel
Strand 3	K	3861	3863	anti-parallel
Strand 4	N	343	344	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3898	3899	first strand
Strand 2	N	337	338	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3906	3907	first strand
Strand 2	K	3941	3942	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3915	3920	first strand
Strand 2	K	3923	3928	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	30	32	first strand
Strand 2	N	39	42	anti-parallel
Strand 3	N	47	51	anti-parallel
Strand 4	N	58	63	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	69	73	first strand
Strand 2	N	80	85	anti-parallel
Strand 3	N	91	94	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	113	115	first strand
Strand 2	N	123	125	anti-parallel
Strand 3	N	133	135	anti-parallel
Strand 4	N	143	144	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	156	159	first strand
Strand 2	N	165	169	anti-parallel
Strand 3	N	174	179	anti-parallel
Strand 4	N	187	190	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	201	205	first strand
Strand 2	N	212	217	anti-parallel
Strand 3	N	222	226	anti-parallel
Strand 4	N	243	245	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	254	259	first strand
Strand 2	N	265	270	anti-parallel
Strand 3	N	276	280	anti-parallel
Strand 4	N	286	289	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	310	311	first strand
Strand 2	N	320	321	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	12	16	first strand
Strand 2	O	2	6	anti-parallel
Strand 3	O	66	67	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	43	45	first strand
Strand 2	O	48	50	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	306	308	first strand
Strand 2	T	479	481	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	314	316	first strand
Strand 2	T	472	474	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	396	398	first strand
Strand 2	T	325	328	anti-parallel
Strand 3	T	498	499	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	331	332	first strand
Strand 2	T	391	392	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	346	347	first strand
Strand 2	T	469	470	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	372	374	first strand
Strand 2	T	379	381	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	448	450	first strand
Strand 2	T	455	458	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	36	37	first strand
Strand 2	R	330	331	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	41	42	first strand
Strand 2	R	326	327	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	48	53	first strand
Strand 2	R	60	64	anti-parallel
Strand 3	R	68	72	anti-parallel
Strand 4	R	82	83	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	90	93	first strand
Strand 2	R	101	106	anti-parallel
Strand 3	R	112	115	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	136	137	first strand
Strand 2	R	144	145	anti-parallel
Strand 3	R	153	156	anti-parallel
Strand 4	R	163	167	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	177	179	first strand
Strand 2	R	185	188	anti-parallel
Strand 3	R	195	199	anti-parallel
Strand 4	R	205	209	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	219	222	first strand
Strand 2	R	228	232	anti-parallel
Strand 3	R	238	242	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	264	266	first strand
Strand 2	R	274	277	anti-parallel
Strand 3	R	283	286	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	304	309	first strand
Strand 2	R	316	320	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KIV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KIV