Analysis of interatomic Contacts of Structural Units in PDB entry:
6KIZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KIZ entry

There are 14 chains in PDB entry 6KIZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	ARG 134
B	LYS 20	GLY 101
C	ARG 11	PRO 117
D	ARG 27	SER 120
E	PRO 38	ARG 134
F	ASP 24	GLY 101
G	LYS 13	PRO 117
H	LYS 28	LYS 122
I	T 2	A 146
J	T 2	A 146
N	ASN 12	VAL 380
K	ALA 3764	ASN 3969
R	PRO 33	SER 332
T	VAL 287	GLY 504

There are 38 helices in PDB entry 6KIZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	131	Right-handed alpha
Helix 5	AA5	B	30	42	Right-handed alpha
Helix 6	AA6	B	49	77	Right-handed alpha
Helix 7	AA7	B	82	93	Right-handed alpha
Helix 8	AA8	C	16	22	Right-handed alpha
Helix 9	AA9	C	27	37	Right-handed alpha
Helix 10	AB1	C	46	73	Right-handed alpha
Helix 11	AB2	C	79	90	Right-handed alpha
Helix 12	AB3	C	91	97	Right-handed alpha
Helix 13	AB4	D	34	46	Right-handed alpha
Helix 14	AB5	D	53	81	Right-handed alpha
Helix 15	AB6	D	87	99	Right-handed alpha
Helix 16	AB7	D	100	120	Right-handed alpha
Helix 17	AB8	E	44	57	Right-handed alpha
Helix 18	AB9	E	63	76	Right-handed alpha
Helix 19	AC1	E	85	114	Right-handed alpha
Helix 20	AC2	E	120	131	Right-handed alpha
Helix 21	AC3	F	24	29	Right-handed 310
Helix 22	AC4	F	30	42	Right-handed alpha
Helix 23	AC5	F	50	76	Right-handed alpha
Helix 24	AC6	F	82	94	Right-handed alpha
Helix 25	AC7	G	16	22	Right-handed alpha
Helix 26	AC8	G	27	37	Right-handed alpha
Helix 27	AC9	G	46	73	Right-handed alpha
Helix 28	AD1	G	79	90	Right-handed alpha
Helix 29	AD2	G	91	97	Right-handed alpha
Helix 30	AD3	H	34	46	Right-handed alpha
Helix 31	AD4	H	52	81	Right-handed alpha
Helix 32	AD5	H	87	99	Right-handed alpha
Helix 33	AD6	H	100	121	Right-handed alpha
Helix 34	AD7	N	227	234	Right-handed alpha
Helix 35	AD8	K	3815	3831	Right-handed alpha
Helix 36	AD9	K	3866	3879	Right-handed alpha
Helix 37	AE1	K	3900	3904	Right-handed 310
Helix 38	AE2	T	499	503	Right-handed 310

There are 30 sheets in PDB entry 6KIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	31	32	first strand
Strand 2	N	39	41	anti-parallel
Strand 3	N	47	52	anti-parallel
Strand 4	N	57	63	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	80	82	first strand
Strand 2	N	92	94	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	110	112	first strand
Strand 2	N	119	127	anti-parallel
Strand 3	N	115	116	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	110	112	first strand
Strand 2	N	119	127	anti-parallel
Strand 3	N	133	136	anti-parallel
Strand 4	N	142	144	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	165	169	first strand
Strand 2	N	175	179	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	201	204	first strand
Strand 2	N	212	217	anti-parallel
Strand 3	N	221	226	anti-parallel
Strand 4	N	243	246	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	254	259	first strand
Strand 2	N	265	270	anti-parallel
Strand 3	N	276	280	anti-parallel
Strand 4	N	288	290	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	300	303	first strand
Strand 2	N	310	314	anti-parallel
Strand 3	N	317	319	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	343	344	first strand
Strand 2	K	3861	3864	parallel
Strand 3	K	3891	3894	anti-parallel
Strand 4	K	3884	3886	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3833	3835	first strand
Strand 2	K	3841	3843	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3854	3857	first strand
Strand 2	K	3923	3930	anti-parallel
Strand 3	K	3913	3920	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	36	40	first strand
Strand 2	R	328	331	anti-parallel
Strand 3	R	315	320	anti-parallel
Strand 4	R	304	309	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	48	53	first strand
Strand 2	R	60	64	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	69	72	first strand
Strand 2	R	79	83	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	90	95	first strand
Strand 2	R	101	106	anti-parallel
Strand 3	R	111	115	anti-parallel
Strand 4	R	124	125	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	132	137	first strand
Strand 2	R	143	148	anti-parallel
Strand 3	R	153	157	anti-parallel
Strand 4	R	166	167	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	177	179	first strand
Strand 2	R	185	188	anti-parallel
Strand 3	R	195	199	anti-parallel
Strand 4	R	205	209	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	217	222	first strand
Strand 2	R	228	233	anti-parallel
Strand 3	R	239	242	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	273	276	first strand
Strand 2	R	282	287	anti-parallel
Strand 3	R	296	298	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	299	300	first strand
Strand 2	T	306	308	anti-parallel
Strand 3	T	479	481	anti-parallel
Strand 4	T	331	335	anti-parallel
Strand 5	T	391	392	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	315	316	first strand
Strand 2	T	469	473	anti-parallel
Strand 3	T	343	347	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	373	374	first strand
Strand 2	T	379	380	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	447	448	first strand
Strand 2	T	458	460	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KIZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KIZ